View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10365_high_24 (Length: 343)
Name: NF10365_high_24
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 6 - 343
Target Start/End: Original strand, 10078405 - 10078742
Alignment:
| Q |
6 |
ttcttagttagcttagtattgctatttgactgtaatgatatgccaatgccagtactgaaatgtttatttttcttgcattctctcagacagcttagccaaa |
105 |
Q |
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| T |
10078405 |
ttcttagttagcttaatattgctatttgactgtaatgatatgccaatgacagtactgaaatgtttatttttcttgcattctctcagacagcttagccaaa |
10078504 |
T |
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| Q |
106 |
ttccctcggagaacaagtaattcatctggacatcataatcaggcgcaacagtctgaagaacaattacagcagcaacagcagcatatggtggcccccaact |
205 |
Q |
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| T |
10078505 |
ttccctcggagaacaagtaattcatctggacatcataatcaggcgcaacagtctgaagatcaattacagcagcaacaacagcatatggtggcccccaact |
10078604 |
T |
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| Q |
206 |
caaatggtgatcaaaactctgtgcaagctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatc |
305 |
Q |
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| T |
10078605 |
caaatggtgatcaaaactctgtgcaagctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaatgtcaattcagcatctgcatc |
10078704 |
T |
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| Q |
306 |
gaccaccacaagcaccattgttggacttctccaccaga |
343 |
Q |
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| T |
10078705 |
gaccaccacaagcaccattgttggacttctccaccaga |
10078742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 89 - 341
Target Start/End: Complemental strand, 40776434 - 40776179
Alignment:
| Q |
89 |
cagacagcttagccaaattccctcggagaacaagtaattcatctggacatcataatcaggcgcaacagtctgaagaacaatta---cagcagcaacagca |
185 |
Q |
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| T |
40776434 |
cagagagcttagctaaattccctcggagaacagttaattcctgtggagttcgtaatcaagctcaacagcatgaagatcaattaaaacaacagcagcagca |
40776335 |
T |
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| Q |
186 |
gcatatggtggcccccaactcaaatggtgatcaaaactctgtgcaagctgctgctatgcaagtcccttctaacaatggtgtggtaagtgtaaataacaat |
285 |
Q |
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| T |
40776334 |
acaaatgatggtccataactcaaatggcgatcaaaacccagtgcaagctgcttccatgcaaattgcttccagcaatggtatggttagtgtaaatagttct |
40776235 |
T |
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| Q |
286 |
gtcaattcagcatctgcatcgaccaccacaagcaccattgttggacttctccacca |
341 |
Q |
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| T |
40776234 |
gtcaactcggcgtccgcatcaacaaccacaagcactattgttggacttctccacca |
40776179 |
T |
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