View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10365_high_25 (Length: 343)
Name: NF10365_high_25
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_25 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 33814557 - 33814875
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg |
124 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33814557 |
catcaaaaagatacttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagacaaccaataaggaaaaatg |
33814656 |
T |
|
| Q |
125 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
224 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33814657 |
gttacaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
33814756 |
T |
|
| Q |
225 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33814757 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaagtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
33814856 |
T |
|
| Q |
325 |
aaatattctcaccggtggt |
343 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
33814857 |
aaatattctcaccggtggt |
33814875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 343
Target Start/End: Original strand, 33809826 - 33809957
Alignment:
| Q |
213 |
aaaaataaatgggtgttcaaact-caagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtg-ccatcaaaagaaagg |
310 |
Q |
| |
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|||||||||||||| |||||||| ||| | | ||| || |||||||| ||||| |||||||||| |||||| |||||||||||| || |||||||||||| |
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| T |
33809826 |
aaaaataaatgggttttcaaacttcaattttaaaggga-caacccaacccccaagtacaaagcatgaattggtgtgaaggggtgcccttcaaaagaaagg |
33809924 |
T |
|
| Q |
311 |
cattgattttgaagaaatattctcaccggtggt |
343 |
Q |
| |
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||||||||||||| |||| || || |||||||| |
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| T |
33809925 |
cattgattttgaaaaaatgttttccccggtggt |
33809957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 25 - 343
Target Start/End: Original strand, 657 - 975
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
657 |
catcaagaagatacttctcaggtgaatatgtaaacttcacaaaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
756 |
T |
|
| Q |
125 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
757 |
gttgcaatccatggaagaagagatgcaatccctaaaggagaatgaaacgtatgacctggtaaaattaccagatggaaagagggcattgaaaaataaatgg |
856 |
T |
|
| Q |
225 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
324 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
857 |
gtgttcaaactcaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
956 |
T |
|
| Q |
325 |
aaatattctcaccggtggt |
343 |
Q |
| |
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||||||||||||||||||| |
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| T |
957 |
aaatattctcaccggtggt |
975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 342
Target Start/End: Complemental strand, 9754594 - 9754277
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
9754594 |
catcaagaagatacttctcaggtgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
9754495 |
T |
|
| Q |
125 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
224 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
9754494 |
gttgtaatccatggaagaagagatgcaatccctaaaggagaatgagacgtatgacctggtaaaattgccaaatggaaagagggcattgaaaaataaatgg |
9754395 |
T |
|
| Q |
225 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
324 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
9754394 |
gtgttcaaacttaagtctgaagagaacaacccaaatcccagatacaaagcacgaatagtcgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
9754295 |
T |
|
| Q |
325 |
aaatattctcaccggtgg |
342 |
Q |
| |
|
||||||||||| |||||| |
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| T |
9754294 |
aaatattctcatcggtgg |
9754277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 25 - 343
Target Start/End: Complemental strand, 54969490 - 54969172
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||| |
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|
| T |
54969490 |
catcaagaagatacttctcaggtgaatatgtaaacttcaccgaggaaggcgaacctcaaagcttcatggaagccatagagacaaccaataaagaaaaatg |
54969391 |
T |
|
| Q |
125 |
gttgcaatccatggaagaagagatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgg |
224 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54969390 |
gttgcaatccatggaagaagagatgcaatccctaaaggagaatgacacgtatgacctggtcaaattaccagatggaaagagggcattgaaaaataaatgg |
54969291 |
T |
|
| Q |
225 |
gtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaag |
324 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
54969290 |
gtgtttaaactcaagtctgaagagaacaacccaaatcccagatacaaggcacgaatagtcgtgaaggggtgccatcaaaagaaagacgttgattttgaag |
54969191 |
T |
|
| Q |
325 |
aaatattctcaccggtggt |
343 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
54969190 |
aaatattctcaccggtggt |
54969172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 55 - 337
Target Start/End: Complemental strand, 4284273 - 4283994
Alignment:
| Q |
55 |
taaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataaggaaaaatggttgcaatccatggaagaagagatgaaatc |
154 |
Q |
| |
|
||||||| ||| | ||| |||||||||||||| |||||||||| ||||||| |||||||||| |||||||| |||||| ||| ||||||| ||| ||| |
|
|
| T |
4284273 |
taaattttactaatgaaagggaacctcaaagcatcatggaagccatagagacaaccaataagcaaaaatggctgcaatgcattcaagaagaaatgccatc |
4284174 |
T |
|
| Q |
155 |
cctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaac |
254 |
Q |
| |
|
|||||||||||| | || |||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||| |||| ||||||| |||||||| |
|
|
| T |
4284173 |
cctaaaggagaaccaaacatatgacttggtaaaattactgaatggaaatagggcattgaaaaataaacgggtgttcaagctcatgtctgaatagaacaac |
4284074 |
T |
|
| Q |
255 |
ccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcacc |
337 |
Q |
| |
|
||||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4284073 |
tcaaaccctaggtacaaagcacga---gtcgtgaaggaatgccatcaaaagaaaggcattgattttgaagaaaaattctcacc |
4283994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 13563767 - 13563709
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaa |
83 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
13563767 |
catcaagaagatacttctcaggtgaatatgtaaacttcactaaggaaggcgaacctcaa |
13563709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 145 - 343
Target Start/End: Complemental strand, 4837704 - 4837506
Alignment:
| Q |
145 |
agatgaaatccctaaaggagaatgagacgtatgacctggtaaaattaccagatggaaaaagggcattgaaaaataaatgggtgttcaaactcaagtctga |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| |
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|
| T |
4837704 |
agatgcaatccctaaaggagaatgagacgtatgatctggtaaaattaccagatggaaagagggcgttgaaaaacaagtgggtgttcaaactcaagtctga |
4837605 |
T |
|
| Q |
245 |
agagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaaaggcattgattttgaagaaatattctcaccggtggt |
343 |
Q |
| |
|
||||||||||||||| |||| |||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4837604 |
agagaacaacccaaatcccatatacaaagcacaaatagtcgtgaaggggtgccatcgaaagaaaggcattgattttgaagaaatattctcaccagtggt |
4837506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 4837794 - 4837703
Alignment:
| Q |
25 |
catcaagaagatatttctcaggtgaatatgtaaatttcactgaggaaggggaacctcaaagcttcatggaagctatagagataaccaataag |
116 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
4837794 |
catcaaaaagatacttctcagttgaatatgtaaacttcactgaggaaggggaacctcaaagcttcatggaagccatagagacaaccaataag |
4837703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 208 - 343
Target Start/End: Complemental strand, 1130219 - 1130084
Alignment:
| Q |
208 |
cattgaaaaataaatgggtgttcaaactcaagtctgaagagaacaacccaaaccccaggtacaaagcacgaattgttgtgaaggggtgccatcaaaagaa |
307 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||| |||||||||| || |
|
|
| T |
1130219 |
cattgaaaaataattggatgttcaaactcaagtctgaagagaacaagttgaaccccgggtacaaagcacgaattgtcgctaaggggcgccatcaaaataa |
1130120 |
T |
|
| Q |
308 |
aggcattgattttgaagaaatattctcaccggtggt |
343 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1130119 |
aggcaatgattttgaagaaatattctcatcggtggt |
1130084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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