View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10365_high_35 (Length: 323)
Name: NF10365_high_35
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 33924688 - 33924987
Alignment:
| Q |
15 |
agggacaacaatgattactgagaagccgccaatagaaatttcaactccagatatcatattataaaattttggtgacttcagaggttagtaagatgcagta |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33924688 |
agggacaacaatgattattgagaagccgccaatagaaatttcaactccagatatcatattataaaattttggtgacttcagaggttagtaagatgcagta |
33924787 |
T |
|
| Q |
115 |
atcttcaaaggttaagtatatgctcagttgaaaatgaaaacagttcaaatattcctaacttgacaaagatattgtccaaaagctccgtgctcttttcttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33924788 |
atcttcaaaggttaagtatatgctcagttgaaaatgaaaacagttcaaatattcctaacttgacaaagattttgtccaaaagctccgtgctcttttcttc |
33924887 |
T |
|
| Q |
215 |
tgacttcttgtagtaaacatcgaaagattgcaggatcattaagaattcattgttttccttgatcacttttcattagattcacgtaaaatgagttttgtat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33924888 |
tgacttcttgtagtaaacatcgaaagattgcaggaccattaagaattcattgttttccttgatcacttttcattaaattcacgtaaaatgagttttgtat |
33924987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 33909618 - 33909666
Alignment:
| Q |
53 |
tttcaactccagatatcatattataaaattttggtgacttcagaggtta |
101 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
33909618 |
tttcaattccagatatcatgttataaaatttttgtgacttcagaggtta |
33909666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 33912610 - 33912656
Alignment:
| Q |
48 |
agaaatttcaactccagatatcatattataaaattttggtgacttca |
94 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
33912610 |
agaaatttaaattccagatatcagattataaaattttggtcacttca |
33912656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University