View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10365_high_38 (Length: 321)

Name: NF10365_high_38
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10365_high_38
NF10365_high_38
[»] chr3 (34 HSPs)
chr3 (1-301)||(27050109-27050409)
chr3 (118-217)||(8022706-8022805)
chr3 (136-217)||(8603127-8603209)
chr3 (101-169)||(13438556-13438624)
chr3 (90-197)||(17385325-17385433)
chr3 (127-202)||(25105581-25105657)
chr3 (135-217)||(15551132-15551215)
chr3 (90-199)||(25486993-25487103)
chr3 (90-190)||(6808896-6808997)
chr3 (260-301)||(20419441-20419482)
chr3 (90-181)||(19978350-19978442)
chr3 (255-301)||(3294812-3294859)
chr3 (119-202)||(8853538-8853621)
chr3 (251-290)||(14259482-14259521)
chr3 (135-213)||(31413915-31413994)
chr3 (126-172)||(11401078-11401124)
chr3 (251-301)||(11834193-11834243)
chr3 (135-211)||(17760071-17760148)
chr3 (135-211)||(19061391-19061468)
chr3 (251-299)||(8897801-8897849)
chr3 (128-172)||(54040205-54040249)
chr3 (128-172)||(54049492-54049536)
chr3 (101-172)||(2548032-2548106)
chr3 (120-187)||(16220345-16220412)
chr3 (127-217)||(17391793-17391884)
chr3 (1-83)||(17759931-17760011)
chr3 (1-83)||(19061251-19061331)
chr3 (4-51)||(21168221-21168268)
chr3 (267-301)||(4655785-4655819)
chr3 (134-172)||(21764251-21764289)
chr3 (1-85)||(43429038-43429119)
chr3 (12-83)||(15549144-15549212)
chr3 (260-301)||(24901349-24901390)
chr3 (101-165)||(12254387-12254451)
[»] chr8 (21 HSPs)
chr8 (3-187)||(18032840-18033023)
chr8 (118-217)||(24623264-24623363)
chr8 (127-213)||(31195903-31195990)
chr8 (127-194)||(25261831-25261898)
chr8 (135-217)||(17500471-17500554)
chr8 (260-301)||(18119871-18119912)
chr8 (125-217)||(20177656-20177749)
chr8 (125-217)||(20222383-20222476)
chr8 (135-211)||(25608601-25608678)
chr8 (135-217)||(17265361-17265444)
chr8 (120-187)||(23543813-23543880)
chr8 (153-217)||(23217484-23217549)
chr8 (1-52)||(19333122-19333173)
chr8 (135-216)||(16041171-16041253)
chr8 (135-216)||(16042847-16042929)
chr8 (252-290)||(17624574-17624612)
chr8 (135-216)||(18610714-18610796)
chr8 (251-301)||(23638583-23638633)
chr8 (3-83)||(24266618-24266695)
chr8 (3-83)||(29296515-29296592)
chr8 (12-83)||(17265504-17265572)
[»] scaffold0282 (1 HSPs)
scaffold0282 (1-172)||(20467-20641)
[»] scaffold0205 (2 HSPs)
scaffold0205 (34-218)||(4045-4230)
scaffold0205 (2-83)||(3978-4059)
[»] chr6 (25 HSPs)
chr6 (1-217)||(5485835-5486050)
chr6 (101-215)||(12974984-12975098)
chr6 (245-301)||(9520134-9520190)
chr6 (72-199)||(24217325-24217453)
chr6 (135-213)||(22595128-22595207)
chr6 (135-217)||(31162523-31162606)
chr6 (251-301)||(17821626-17821676)
chr6 (1-83)||(4228783-4228863)
chr6 (135-213)||(16374838-16374917)
chr6 (117-187)||(19728988-19729058)
chr6 (135-202)||(17084987-17085055)
chr6 (1-83)||(11374348-11374428)
chr6 (128-217)||(4173307-4173397)
chr6 (1-81)||(4173174-4173252)
chr6 (135-217)||(4228923-4229006)
chr6 (1-83)||(29162007-29162087)
chr6 (136-217)||(11374489-11374571)
chr6 (135-216)||(19627784-19627866)
chr6 (3-83)||(29604179-29604256)
chr6 (135-216)||(35010948-35011030)
chr6 (125-202)||(1560372-1560449)
chr6 (127-172)||(12466177-12466222)
chr6 (4-83)||(17375252-17375329)
chr6 (17-83)||(21621753-21621816)
chr6 (136-172)||(29162148-29162184)
[»] chr4 (16 HSPs)
chr4 (24-172)||(19076290-19076440)
chr4 (52-199)||(18420441-18420589)
chr4 (119-240)||(14616440-14616563)
chr4 (2-91)||(14617746-14617835)
chr4 (55-172)||(10115928-10116046)
chr4 (135-202)||(40902370-40902438)
chr4 (135-213)||(41918420-41918499)
chr4 (251-301)||(12452322-12452372)
chr4 (90-218)||(13933258-13933386)
chr4 (119-187)||(18667793-18667861)
chr4 (105-199)||(20847372-20847467)
chr4 (101-187)||(18713447-18713533)
chr4 (135-202)||(15215511-15215579)
chr4 (253-301)||(16569768-16569816)
chr4 (135-216)||(19699238-19699320)
chr4 (135-216)||(19709823-19709905)
[»] chr2 (12 HSPs)
chr2 (24-202)||(34135790-34135972)
chr2 (90-217)||(22576492-22576619)
chr2 (126-218)||(23157865-23157959)
chr2 (126-218)||(23569122-23569216)
chr2 (2-83)||(20271983-20272062)
chr2 (144-217)||(21652761-21652835)
chr2 (135-217)||(45619705-45619788)
chr2 (135-213)||(22331123-22331202)
chr2 (135-216)||(7513687-7513769)
chr2 (135-216)||(42180034-42180116)
chr2 (241-290)||(34136048-34136096)
chr2 (126-222)||(18994713-18994808)
[»] chr7 (26 HSPs)
chr7 (1-171)||(8325320-8325489)
chr7 (56-216)||(26427074-26427235)
chr7 (52-183)||(6461336-6461468)
chr7 (119-217)||(9128915-9129014)
chr7 (1-83)||(45148180-45148260)
chr7 (125-217)||(39293365-39293458)
chr7 (128-217)||(14278125-14278215)
chr7 (136-200)||(4072219-4072284)
chr7 (126-246)||(14974185-14974305)
chr7 (126-246)||(15403661-15403781)
chr7 (125-217)||(44306895-44306988)
chr7 (127-217)||(16065009-16065101)
chr7 (101-171)||(3172157-3172227)
chr7 (101-187)||(16436378-16436464)
chr7 (261-301)||(3135831-3135871)
chr7 (127-183)||(6210571-6210627)
chr7 (12-83)||(16207030-16207099)
chr7 (135-217)||(45148036-45148119)
chr7 (135-216)||(14252968-14253050)
chr7 (3-83)||(14939398-14939475)
chr7 (3-83)||(15366991-15367068)
chr7 (135-172)||(12246473-12246510)
chr7 (90-218)||(14280024-14280151)
chr7 (125-202)||(15755926-15756003)
chr7 (90-170)||(17151024-17151105)
chr7 (17-83)||(17225414-17225477)
[»] chr5 (16 HSPs)
chr5 (53-199)||(37278041-37278188)
chr5 (74-199)||(37275770-37275896)
chr5 (101-194)||(25340907-25341001)
chr5 (128-211)||(14343506-14343590)
chr5 (135-217)||(11765058-11765141)
chr5 (128-202)||(16837007-16837082)
chr5 (126-187)||(19318120-19318181)
chr5 (251-301)||(22949899-22949949)
chr5 (3-83)||(24082727-24082804)
chr5 (1-57)||(21108171-21108227)
chr5 (4-51)||(5622934-5622981)
chr5 (3-83)||(29912670-29912747)
chr5 (135-216)||(34937905-34937987)
chr5 (4-83)||(26561292-26561368)
chr5 (119-222)||(19266830-19266931)
chr5 (251-299)||(24192486-24192534)
[»] scaffold0058 (1 HSPs)
scaffold0058 (3-183)||(79315-79493)
[»] scaffold0333 (1 HSPs)
scaffold0333 (1-95)||(1487-1581)
[»] scaffold0231 (1 HSPs)
scaffold0231 (135-216)||(14593-14675)
[»] scaffold0317 (2 HSPs)
scaffold0317 (127-217)||(15508-15599)
scaffold0317 (1-83)||(15392-15472)
[»] scaffold0005 (2 HSPs)
scaffold0005 (119-240)||(200814-200937)
scaffold0005 (2-91)||(199542-199631)
[»] scaffold0174 (1 HSPs)
scaffold0174 (1-83)||(21583-21663)
[»] scaffold0468 (1 HSPs)
scaffold0468 (138-217)||(12630-12710)
[»] scaffold0115 (1 HSPs)
scaffold0115 (135-213)||(20176-20255)
[»] scaffold0013 (1 HSPs)
scaffold0013 (135-217)||(10997-11080)
[»] chr1 (5 HSPs)
chr1 (1-83)||(33395936-33396016)
chr1 (128-187)||(21199238-21199297)
chr1 (135-216)||(20252652-20252734)
chr1 (135-172)||(33395839-33395876)
chr1 (17-83)||(17022185-17022248)
[»] scaffold0186 (1 HSPs)
scaffold0186 (127-242)||(11460-11577)
[»] scaffold0090 (1 HSPs)
scaffold0090 (125-217)||(36416-36509)
[»] scaffold0024 (1 HSPs)
scaffold0024 (125-194)||(101105-101174)
[»] scaffold0017 (1 HSPs)
scaffold0017 (126-217)||(11080-11172)
[»] scaffold0508 (1 HSPs)
scaffold0508 (118-185)||(5836-5903)
[»] scaffold0175 (1 HSPs)
scaffold0175 (3-83)||(6657-6734)
[»] scaffold0003 (1 HSPs)
scaffold0003 (101-187)||(26008-26094)
[»] scaffold0396 (1 HSPs)
scaffold0396 (135-213)||(171-250)
[»] scaffold0357 (1 HSPs)
scaffold0357 (3-83)||(6351-6428)
[»] scaffold0138 (3 HSPs)
scaffold0138 (135-216)||(26760-26842)
scaffold0138 (135-172)||(27820-27857)
scaffold0138 (135-172)||(39816-39853)
[»] scaffold0107 (1 HSPs)
scaffold0107 (3-83)||(12056-12133)
[»] scaffold0028 (2 HSPs)
scaffold0028 (3-83)||(63963-64040)
scaffold0028 (241-301)||(39977-40036)
[»] scaffold0009 (2 HSPs)
scaffold0009 (126-172)||(256037-256083)
scaffold0009 (17-83)||(68120-68183)
[»] scaffold0010 (1 HSPs)
scaffold0010 (17-83)||(29724-29787)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 27050409 - 27050109
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaat 100  Q
    ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27050409 tagtcatattaagtcatatgagaaatgtaaaaagaggtgtacttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaat 27050310  T
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaa 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27050309 acggtaagattattttcggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaa 27050210  T
Q  201 taactgacttggtgaatacgtgattggtaaaccttggtgattgttgatgttttgttattttttgtgatacttgtacacttggtgattttaaatgatgatg 300  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27050209 taattgacttggtgaatacgtgattggtgaaccttggtgattgttgatgttttgttattttttgtgatacttgtacacttggtgattttaaatgatgatg 27050110  T
Q  301 t 301  Q
    |    
T  27050109 t 27050109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 8022805 - 8022706
Alignment:
Q  118 ggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||||| |||||||||||||| | | |||||||||||||| |||  ||| |||||||||| | |||||||||||||  ||||| |||||||    
T  8022805 ggaatccaatggtaccacatgcatctagaagattctagaacattgcatgaattcattatttggtgagtcatatcataattgaatatgtgactaggtgaat 8022706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 8603209 - 8603127
Alignment:
Q  136 atgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||||||| ||| ||||||||||||||||||||  |||||| |||||||||||| |||||||||| ||||||| |||||    
T  8603209 atgcatctagaagagtctagaacattgcatgcatttgaatagttgatgagtcgtgtcacaattgaataagtgacttgttgaat 8603127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 13438624 - 13438556
Alignment:
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcat 169  Q
    ||||||| ||||| | |||||||| ||||||| |||||||||||||| ||| |||||||||||||||||    
T  13438624 acggtaaaattatctctggaatcctatggtaccacatgcatctagaagagtctagaacattgcatgcat 13438556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 17385433 - 17385325
Alignment:
Q  90 gtggattcaatacggtaagattatttttggaatccaatg-gtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgt 188  Q
    ||||||||||| |||||||||||| |    ||||||||  |||| |||||||||||||| ||| |||||||||||||||||||| || |||||||   ||    
T  17385433 gtggattcaatgcggtaagattatctccataatccaattagtaccacatgcatctagaagagtctagaacattgcatgcatttgataattggtgaaatgt 17385334  T
Q  189 gtcataatt 197  Q
    |||||||||    
T  17385333 gtcataatt 17385325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 25105581 - 25105657
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaata 202  Q
    |||||| ||||||| |||||  ||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  25105581 tggtaccacatgcacctagaggagtctagaacattgcatgcatttgaatagttgatgagtcgtgtcataattgaata 25105657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 15551132 - 15551215
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||| ||| ||||||||||||||||||||  || ||| ||||||||||||||| ||||||  ||||||| |||||    
T  15551132 catgcatctagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcataaatgaatatgtgacttgatgaat 15551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 199
Target Start/End: Original strand, 25486993 - 25487103
Alignment:
Q  90 gtggattcaatacggtaagattatttttggaatccaa-tggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgt 188  Q
    ||||||||||||||| || ||||| | |  ||||||| |||||| |||||||| ||||||||| ||||||||| |||||| ||| || ||||| | ||||    
T  25486993 gtggattcaatacggcaaaattatctctataatccaattggtaccacatgcatttagaatagtctagaacattacatgcacttgataattggttattcgt 25487092  T
Q  189 gtcataattga 199  Q
    |||||| ||||    
T  25487093 gtcatacttga 25487103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 6808997 - 6808896
Alignment:
Q  90 gtggattcaatacggtaagattatttttggaatccaatgg-tactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgt 188  Q
    ||||||| |||||||||| ||| | |   ||||||||| | ||| |||||||||||||| ||| |||||||||||||||| ||| || ||||||||||||    
T  6808997 gtggatttaatacggtaaaattttctcaagaatccaattgataccacatgcatctagaagagtctagaacattgcatgcacttgataattggtgagtcgt 6808898  T
Q  189 gt 190  Q
    ||    
T  6808897 gt 6808896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 20419482 - 20419441
Alignment:
Q  260 ttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  20419482 ttttgttatacttgtacacttggtgattttaaatgatgatgt 20419441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 19978350 - 19978442
Alignment:
Q  90 gtggattcaatacggtaagattatttttggaatccaat-ggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggt 181  Q
    |||||||||||||||||| ||||| |  | |||||| | ||||| |||||||||||| | ||| ||||| |||||||||| ||||||||||||    
T  19978350 gtggattcaatacggtaaaattatctccgcaatccatttggtaccacatgcatctaggagagtctagaatattgcatgcacttgttagttggt 19978442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 3294812 - 3294859
Alignment:
Q  255 ttattttttgtgatacttgtacacttggtgattttaaat-gatgatgt 301  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||    
T  3294812 ttattttttgtgatacttgtacacttggtgatcttaaatcgatgatgt 3294859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 8853538 - 8853621
Alignment:
Q  119 gaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaata 202  Q
    |||||| ||||||  |||| ||||||||  ||| |||||||||||||||||||  || ||||||||||| |||||| |||||||    
T  8853538 gaatcctatggtatcacatacatctagatgagtctagaacattgcatgcatttaataattggtgagtcgagtcatacttgaata 8853621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 290
Target Start/End: Complemental strand, 14259521 - 14259482
Alignment:
Q  251 tttgttattttttgtgatacttgtacacttggtgatttta 290  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  14259521 tttgttattttttgtgatgcttgtacacttggtgatttta 14259482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 31413915 - 31413994
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcattt-gttagttggtgagtcgtgtcataattgaataactgacttggt 213  Q
    ||||||||||||| ||| |||||||||||||||||||    | ||| ||||||||||||||||||||||  |||||||||    
T  31413915 catgcatctagaagagtctagaacattgcatgcatttaaaaaattgatgagtcgtgtcataattgaatatgtgacttggt 31413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 11401124 - 11401078
Alignment:
Q  126 atggtactacatgcatctagaatagtatagaacattgcatgcatttg 172  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  11401124 atggtaccacatgcatctagaagagtctagaacattgcatgcatttg 11401078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 11834193 - 11834243
Alignment:
Q  251 tttgttattttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||| ||||| |||||||||||||||||||||||||| | |||||||||    
T  11834193 tttgttgtttttggtgatacttgtacacttggtgattttgattgatgatgt 11834243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 17760071 - 17760148
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttg 211  Q
    |||||||| |||| ||| ||||||||||||||||||||  || ||| |||||||| |||||||||||||  |||||||    
T  17760071 catgcatcaagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtatcataattgaatatgtgacttg 17760148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 19061391 - 19061468
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttg 211  Q
    |||||||| |||| ||| ||||||||||||||||||||  || ||| |||||||| |||||||||||||  |||||||    
T  19061391 catgcatcaagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtatcataattgaatatgtgacttg 19061468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 8897849 - 8897801
Alignment:
Q  251 tttgttattttttgtgatacttgtacacttggtgattttaaatgatgat 299  Q
    |||||||||||| |||||| |||| |||||||||||||||| |||||||    
T  8897849 tttgttatttttggtgatagttgtgcacttggtgattttaattgatgat 8897801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 54040205 - 54040249
Alignment:
Q  128 ggtactacatgcatctagaatagtatagaacattgcatgcatttg 172  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||    
T  54040205 ggtaccacatgcatctagaagagtctagaacattgcatgcatttg 54040249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 54049492 - 54049536
Alignment:
Q  128 ggtactacatgcatctagaatagtatagaacattgcatgcatttg 172  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||||    
T  54049492 ggtaccacatgcatctagaagagtctagaacattgcatgcatttg 54049536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 2548032 - 2548106
Alignment:
Q  101 acggtaagattatttttggaatcc-aatggtactacatgcatctaga--atagtatagaacattgcatgcatttg 172  Q
    ||||||| ||||| || ||||||| |||||||| |||||||||||||  | ||||||||||||||||| ||||||    
T  2548032 acggtaaaattatcttcggaatcctaatggtaccacatgcatctagagaagagtatagaacattgcatacatttg 2548106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 16220345 - 16220412
Alignment:
Q  120 aatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    ||||| ||||||| |||||||||||||  ||| || ||||||||||||||||  || |||||||||||    
T  16220345 aatcccatggtaccacatgcatctagataagtctaaaacattgcatgcatttaataattggtgagtcg 16220412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 17391884 - 17391793
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||| |||||||||||||| ||| | |||||||||||||||||| || ||||  ||    |||||||||||||||  |||||||||||||    
T  17391884 tggtaccacatgcatctagaagagtcttgaacattgcatgcatttgattggttgacgaagtatgtcataattgaatatgtgacttggtgaat 17391793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17759931 - 17760011
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||| |||| |||| ||||||||||| ||| |||| |||||||||| |||| |  |||| |||| ||||||||||||    
T  17759931 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatagttgaatt--gtaaaaggaggtgtactcttac 17760011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 19061251 - 19061331
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||| |||| |||| ||||||||||| ||| |||| |||||||||| |||| |  |||| |||| ||||||||||||    
T  19061251 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatagttgaatt--gtaaaaggaggtgtactcttac 19061331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 21168221 - 21168268
Alignment:
Q  4 tcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacata 51  Q
    ||||||| |||| |||| ||||||||||| ||||||||||||||||||    
T  21168221 tcatattgagtcatatgagaaatgtaaaaggaggtgtatttttacata 21168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 4655819 - 4655785
Alignment:
Q  267 atacttgtacacttggtgattttaaatgatgatgt 301  Q
    ||||||||||||||||||||||||| |||||||||    
T  4655819 atacttgtacacttggtgattttaattgatgatgt 4655785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 21764251 - 21764289
Alignment:
Q  134 acatgcatctagaatagtatagaacattgcatgcatttg 172  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  21764251 acatgcatctagaatagtctagaacatttcatgcatttg 21764289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 43429038 - 43429119
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgt 85  Q
    |||||||||  |||| |||| ||||||||||| || ||||| |||||||||| |||    |||||||||| ||||||||||||||    
T  43429038 tagtcatatcgagtcatatgagaaatgtaaaaggaagtgtacttttacatagttga---tcgtaagaggaggtgtactcttacgt 43429119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 15549212 - 15549144
Alignment:
Q  12 agtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||| |||| ||||||||||| ||||||||||||||||||| ||   | |||||||||| ||||||| ||||    
T  15549212 agtcatatgtgaaatgtaaaaggaggtgtatttttacatagttg---tgcgtaagaggaggtgtacttttac 15549144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 24901349 - 24901390
Alignment:
Q  260 ttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||| ||||||||||||||||||||||||||  |||||||    
T  24901349 ttttgttatacttgtacacttggtgattttaaacaatgatgt 24901390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 12254387 - 12254451
Alignment:
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcat 165  Q
    ||||||| ||||| |  ||||||| ||||||| |||||||| ||||| ||| |||||||||||||    
T  12254387 acggtaaaattatctccggaatcctatggtaccacatgcatttagaagagtctagaacattgcat 12254451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 18033023 - 18032840
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatac 102  Q
    |||||||| |||| ||||  |||||||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||    
T  18033023 gtcatattgagtcatatgaaaaatgtaaaatgaagtgtacttttacataggtgaaatacgtaagaggaggtgtactcttacgtgggtgtgggttcaa-ac 18032925  T
Q  103 ggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    ||||| ||||| | | ||||| |||||||| |||||||||||||  ||| |||||||||||| |||||||||| |||||||||||    
T  18032924 ggtaaaattatctcttgaatctaatggtaccacatgcatctagatgagtctagaacattgcacgcatttgttaattggtgagtcg 18032840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 217
Target Start/End: Complemental strand, 24623363 - 24623264
Alignment:
Q  118 ggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||  |||||||||||||    
T  24623363 ggaatccaatggtaccacatgcatctagaagagtttagaacattgcatgcatttattatttggtgagtcatgtcataattgaatatgtgacttggtgaat 24623264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 31195903 - 31195990
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggt 213  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||  || ||| ||||||||||||||||||||||  |||||||||    
T  31195903 tggtaccacatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggt 31195990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 25261898 - 25261831
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcata 194  Q
    |||||| |||||||||||||| ||| ||||||||| |||||| |||||| ||||||||||||||||||    
T  25261898 tggtaccacatgcatctagaagagtctagaacattacatgcacttgttaattggtgagtcgtgtcata 25261831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 17500554 - 17500471
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||| ||| ||||||||||||||||||||  || ||| ||||| ||||||||||||||||  ||||||| |||||    
T  17500554 catgcatctagaagagtctagaacattgcatgcatttgaataattgatgagttgtgtcataattgaatatgtgacttgttgaat 17500471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 18119871 - 18119912
Alignment:
Q  260 ttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  18119871 ttttgttatacttgtacacttggtgattttaaatgatgatgt 18119912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 20177656 - 20177749
Alignment:
Q  125 aatggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||| |||||||| ||||| ||| ||||| ||||||||||||||  || ||| |||||||| |||||||||||||  ||||||| |||||    
T  20177656 aatggtaccacatgcatgtagaagagtctagaatattgcatgcatttgagtaattgatgagtcgtttcataattgaatatgtgacttgatgaat 20177749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 20222383 - 20222476
Alignment:
Q  125 aatggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||| |||||||| ||||| ||| ||||| ||||||||||||||  || ||| |||||||| |||||||||||||  ||||||| |||||    
T  20222383 aatggtaccacatgcatgtagaagagtctagaatattgcatgcatttgagtaattgatgagtcgtttcataattgaatatgtgacttgatgaat 20222476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 25608678 - 25608601
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttg 211  Q
    ||||||||||||| ||| ||||||||||||||||||||  ||||||  |||| ||||||||||||||||  |||||||    
T  25608678 catgcatctagaagagtctagaacattgcatgcatttgaatagttgacgagttgtgtcataattgaatatgtgacttg 25608601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 17265444 - 17265361
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatt-tgttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||| ||| |||||||||||||||||| |  || ||| |||| |||||||||||||||||  ||||||| |||||    
T  17265444 catgcatctagaagagtctagaacattgcatgcattatagtaattgatgaggcgtgtcataattgaatatgtgacttgatgaat 17265361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 23543813 - 23543880
Alignment:
Q  120 aatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    ||||| ||||||  |||||||||||||| ||| |||||||||||||||| || ||| |||||||||||    
T  23543813 aatcctatggtatcacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcg 23543880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 23217549 - 23217484
Alignment:
Q  153 tagaacattgcatgcatttgt-tagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||||||||||  || ||| ||||||||||||||||||||||  ||||||| |||||    
T  23217549 tagaacattgcatgcatttgagtaattgatgagtcgtgtcataattgaatatgtgacttgatgaat 23217484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19333122 - 19333173
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacatag 52  Q
    |||||||||| |||| |||| ||||||||||| |||||||| ||||||||||    
T  19333122 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 19333173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 16041171 - 16041253
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  16041171 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 16041253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 16042847 - 16042929
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  16042847 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 16042929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 17624574 - 17624612
Alignment:
Q  252 ttgttattttttgtgatacttgtacacttggtgatttta 290  Q
    |||||||| || |||||||||||||||||||||||||||    
T  17624574 ttgttattgttggtgatacttgtacacttggtgatttta 17624612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 18610796 - 18610714
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  18610796 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 18610714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 23638633 - 23638583
Alignment:
Q  251 tttgttattttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    ||||||||| || |||||||||||||| ||| ||||||||| |||||||||    
T  23638633 tttgttattgttggtgatacttgtacatttgatgattttaattgatgatgt 23638583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 24266695 - 24266618
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  24266695 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 24266618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 29296592 - 29296515
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  29296592 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 29296515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 17265572 - 17265504
Alignment:
Q  12 agtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||| |||| |||||||||||||||||||| |||||||||| ||   | | |||||||| ||||||||||||    
T  17265572 agtcatatgagaaatgtaaaaagaggtgtacttttacatagttg---ttcataagaggaggtgtactcttac 17265504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 20467 - 20641
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaat 100  Q
    |||||||||| |||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  20467 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacataggtgaaatacgtaagaggagttttactcttacgtgggtgtggattcaat 20566  T
Q  101 acggtaagattatttttggaatccaa-tggtactacatgcatct--agaatagtatagaacattgcatgcatttg 172  Q
    ||||||||||||| |  ||||||||| |||||| ||||||||||  |||| ||| ||||||| |||| |||||||    
T  20567 acggtaagattatatccggaatccaactggtaccacatgcatctagagaagagtctagaacactgcaagcatttg 20641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 4045 - 4230
Alignment:
Q  34 gaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatcc-aatggtac 132  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||      ||||| ||||||||    
T  4045 gaggtgtactcttacataggtgaaatacgtaagaggatgtgtactcttacgtggatgtggattc-atacggtaaaattatccccataatccaaatggtac 4143  T
Q  133 tacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcat-aattgaataactgacttggtgaata 218  Q
     |||||||||||||| ||| ||||| |||||||||| |||||| ||||||| ||||||||| |||| ||||| ||||||||||||||    
T  4144 cacatgcatctagaagagtctagaatattgcatgcacttgttaattggtgattcgtgtcataaattaaataagtgacttggtgaata 4230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 3978 - 4059
Alignment:
Q  2 agtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||||||| |||| ||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  3978 agtcatattaagtcatatgagaaatgtaaaaggatgtgtacttttacataggtgaaatacgtaagaggaggtgtactcttac 4059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5485835 - 5486050
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaat 100  Q
    |||||||||| |||| |||| ||||||||||| || ||||| |||||||||||| |||||| | | |||| || |||| |||||| |||||||||||  |    
T  5485835 tagtcatattgagtcatatgagaaatgtaaaaggatgtgtacttttacataggtcaaatacatgaaaggaggtatacttttacgttggtgtggattcg-t 5485933  T
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaa 200  Q
    ||||||| ||||| || ||||| |||| |||| ||||||| |||||| ||  |||||||||||||||| || ||| ||||||||||||||||||||||||    
T  5485934 acggtaaaattatcttaggaattcaattgtaccacatgcacctagaagagactagaacattgcatgcacttattatttggtgagtcgtgtcataattgaa 5486033  T
Q  201 taactgacttggtgaat 217  Q
    ||  |||||| ||||||    
T  5486034 tatatgacttagtgaat 5486050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 12975098 - 12974984
Alignment:
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaa 200  Q
    ||||||| ||||| | |||||||| ||||||| ||||||||||||||  || ||||||||||||| ||||| ||| ||||||| ||||||||||||| ||    
T  12975098 acggtaaaattatatctggaatcctatggtaccacatgcatctagaaatgtctagaacattgcatacatttattatttggtgaatcgtgtcataattcaa 12974999  T
Q  201 taactgacttggtga 215  Q
    ||  |||||||||||    
T  12974998 tatgtgacttggtga 12974984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 9520190 - 9520134
Alignment:
Q  245 tgatgttttgttattttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  9520190 tgatgttttgttatttttggtgatacttgtacacttggtgattttaattgatgatgt 9520134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 24217453 - 24217325
Alignment:
Q  72 gtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatccaat-ggtactacatgcatctagaatagtatagaacattgcatgcatt 170  Q
    ||||||||||||||| ||||||||| ||||| |||| ||||| | | |||||| || ||||| |||||||| ||||| ||| ||||||||||||| || |    
T  24217453 gtgtactcttacgtgagtgtggatttaatactgtaaaattatctatagaatcctattggtaccacatgcatttagaagagtctagaacattgcattcact 24217354  T
Q  171 tgttagttggtgagtcgtgtcataattga 199  Q
    || || |||||||||  ||||||| ||||    
T  24217353 tgataattggtgagttatgtcatacttga 24217325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 22595128 - 22595207
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggt 213  Q
    ||||||||||||| ||| ||||||||||||||||||||  || ||| ||||||||||||||||||||||  |||||||||    
T  22595128 catgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggt 22595207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 31162523 - 31162606
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttgt-tagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||| ||| ||||||||||||||||||||| || ||| |||| |||||||||||||||||  ||||||| |||||    
T  31162523 catgcatctagaagagtctagaacattgcatgcatttgtgtaattgatgaggcgtgtcataattgaatatgtgacttgatgaat 31162606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 17821626 - 17821676
Alignment:
Q  251 tttgttattttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  17821626 tttgttatttttagtgatacttgtacacttggtgattttaattgatgatgt 17821676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4228783 - 4228863
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||| |||| |||| ||| ||||||| |||||||| ||||||||||||||| |  ||||||||| ||||||||||||    
T  4228783 tagtcatattgagtcatatgagaagtgtaaaaggaggtgtacttttacataggtgaatt--gtaagaggaggtgtactcttac 4228863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 16374917 - 16374838
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggt 213  Q
    ||||||||||||| ||| ||||||||||||||||||||  | |||| ||||| ||||||||||||||||  |||||||||    
T  16374917 catgcatctagaagagtctagaacattgcatgcatttgaatggttgatgagttgtgtcataattgaatatgtgacttggt 16374838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 19728988 - 19729058
Alignment:
Q  117 tggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    |||||||  ||||||| |||||||||||||| ||| |||||||||||||||| || ||| |||||||||||    
T  19728988 tggaatcttatggtaccacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcg 19729058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 17084987 - 17085055
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaata 202  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||| ||| | ||| ||||||||||||    
T  17084987 catgcatctagaaaagtctagaacattgcatgcatttgattagttgatgaattgtgacataattgaata 17085055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11374348 - 11374428
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||| |||| |||| ||||||||||| |||||||  |||||||||| |||| |  ||||||||| ||||||||||||    
T  11374348 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtccttttacatagttgaatt--gtaagaggaggtgtactcttac 11374428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 4173307 - 4173397
Alignment:
Q  128 ggtactacatgcatctagaatagtatagaacattgcatgcatttgt-tagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||| ||||||||||||||  || ||||| |||||||||||||   |||||  ||||| ||||||||||||||||  |||||||||||||    
T  4173307 ggtacaacatgcatctagaagtgtctagaatattgcatgcatttaaatagttaatgagttgtgtcataattgaatatgtgacttggtgaat 4173397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4173174 - 4173252
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactctt 81  Q
    |||||||||| |||| |||| ||| ||||||| ||| |||| ||||||||||||||| |  ||||||||| ||||||||||    
T  4173174 tagtcatattgagtcatatgagaagtgtaaaaggagatgtacttttacataggtgaatt--gtaagaggaggtgtactctt 4173252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 4228923 - 4229006
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttgt-tagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||||||||  || ||||| |||||||||||||   |||||  ||||| ||||||||||||||||  |||||||||||||    
T  4228923 catgcatctagaagtgtctagaatattgcatgcatttaaatagttaatgagttgtgtcataattgaatatgtgacttggtgaat 4229006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29162007 - 29162087
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||| |||| |||| |||||||||||  || |||| |||||||||| |||| |  ||||||||| ||||||||||||    
T  29162007 tagtcatattgagtcatatgagaaatgtaaaagaagatgtacttttacatagttgaatt--gtaagaggaggtgtactcttac 29162087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 11374489 - 11374571
Alignment:
Q  136 atgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||||||| ||| ||||||||||||||||||||  | |||| ||| | |||||| |||||||||  |||||| ||||||    
T  11374489 atgcatctagaagagtctagaacattgcatgcatttgagtggttgatgaattgtgtcacaattgaatatgtgactttgtgaat 11374571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 19627866 - 19627784
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  19627866 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 19627784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 29604256 - 29604179
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  29604256 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 29604179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 35010948 - 35011030
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  35010948 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 35011030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 1560449 - 1560372
Alignment:
Q  125 aatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaata 202  Q
    |||||||| ||||| || ||||| ||| |||||||||||| ||| |||||| ||| ||| ||| |||||| |||||||    
T  1560449 aatggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaata 1560372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 12466177 - 12466222
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttg 172  Q
    |||||| |||| ||||||||| ||| ||||||||||||||||||||    
T  12466177 tggtaccacatacatctagaagagtctagaacattgcatgcatttg 12466222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 17375252 - 17375329
Alignment:
Q  4 tcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    ||||||| |||| |||| ||||||||||| ||||| || |||||||||| |||| |  |||||||||  |||||||||||    
T  17375252 tcatattgagtcatatgagaaatgtaaaaggaggtctacttttacatagttgaatt--gtaagaggagttgtactcttac 17375329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 21621816 - 21621753
Alignment:
Q  17 tatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  21621816 tatgtgaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 21621753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 29162148 - 29162184
Alignment:
Q  136 atgcatctagaatagtatagaacattgcatgcatttg 172  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  29162148 atgcatctagaagagtctagaacattgcatgcatttg 29162184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 19076440 - 19076290
Alignment:
Q  24 aatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatc 123  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||||  |||||||||| ||||||||||||||||||| |||| ||||| |  ||||||    
T  19076440 aatgtaaaaggaggtgtatttttacgtatgtgaaatacgtaagaggagatgtactcttatgtgggtgtggattcaatacagtaatattatctccggaatc 19076341  T
Q  124 caatggtactacatgcatct--agaatagtatagaacattgcatgcatttg 172  Q
    ||||||||| ||||||||||  |||| ||| ||||||||||||||||||||    
T  19076340 caatggtaccacatgcatctaaagaaaagtctagaacattgcatgcatttg 19076290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 18420441 - 18420589
Alignment:
Q  52 ggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatccaat-ggtactacatgcatctagaatag 150  Q
    ||||||||||||||  ||| ||||||||||||||||||| | ||| || ||||||| ||||| |   |||| | || ||||||| |||||| ||||| ||    
T  18420441 ggtgaaatacgtaactggaggtgtactcttacgtgggtgagaattaaaaacggtaaaattatctccagaattctattggtactatatgcatttagaagag 18420540  T
Q  151 tatagaacattgcatgcatttgttagttggtgagtcgtgtcataattga 199  Q
    |||||||||||||||||| ||  || |||||||||||||||||| ||||    
T  18420541 tatagaacattgcatgcactttataattggtgagtcgtgtcatacttga 18420589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 14616563 - 14616440
Alignment:
Q  119 gaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcat-aattgaataactgacttggtgaat 217  Q
    ||||||||| |||| |||||||||||||  ||| |||||||||||||||| |||||| ||||||||||||||||| |||| ||||| ||| ||||||| |    
T  14616563 gaatccaatagtaccacatgcatctagaggagtctagaacattgcatgcacttgttaattggtgagtcgtgtcataaatttaataagtgatttggtgatt 14616464  T
Q  218 acgtg-attggtaaaccttggtga 240  Q
    | ||| |||||| || ||||||||    
T  14616463 atgtgcattggtgaaacttggtga 14616440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 14617835 - 14617746
Alignment:
Q  2 agtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgt 91  Q
    ||||||||| |||| |||| ||||||||||| ||||||||  ||||||||||||||||||||| ||||| ||||| |||||| |||||||    
T  14617835 agtcatattgagtcatatgagaaatgtaaaatgaggtgtacctttacataggtgaaatacgtaggaggaggtgtaatcttacatgggtgt 14617746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 10115928 - 10116046
Alignment:
Q  55 gaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatccaa-tggtactacatgcatctagaatagtat 153  Q
    |||||||||||| ||| |||||||||||| | ||||||||||||||||||||| ||||| ||  ||||| || | |||| ||||||||  | || ||| |    
T  10115928 gaaatacgtaagtggaggtgtactcttacattggtgtggattcaatacggtaaaattatattcagaatctaattagtaccacatgcattaaaaagagtct 10116027  T
Q  154 agaacattgcatgcatttg 172  Q
    |||||||||||||||||||    
T  10116028 agaacattgcatgcatttg 10116046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 40902370 - 40902438
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaata 202  Q
    ||||||||||||| ||| ||||||||||||||||||||  || ||| ||||||||||||||||||||||    
T  40902370 catgcatctagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcataattgaata 40902438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 41918420 - 41918499
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggt 213  Q
    ||||||||||||| ||| ||||||||||||||||||||  || ||| ||||||||||||||| ||||||  |||||||||    
T  41918420 catgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataaatgaatatgtgacttggt 41918499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 12452322 - 12452372
Alignment:
Q  251 tttgttattttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  12452322 tttgttatttttggtgatacttgtgcacttggtgattttaattgatgatgt 12452372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 13933386 - 13933258
Alignment:
Q  90 gtggattcaatacggtaagattatttttggaatccaa-tggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgt 188  Q
    |||||||||||||||||| ||||| |||||||||||| | |||  |||||||| |||||  || | ||||||||||||||||||  |||| ||||   ||    
T  13933386 gtggattcaatacggtaaaattatctttggaatccaattagtatcacatgcatgtagaagtgtctggaacattgcatgcatttg-aagttagtgaaatgt 13933288  T
Q  189 gtcataattgaataactgacttggtgaata 218  Q
    |||||| |||||||  |||||| |||||||    
T  13933287 gtcatacttgaatatgtgacttcgtgaata 13933258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 18667793 - 18667861
Alignment:
Q  119 gaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    |||||| | ||||| |||||||||||||| |||||||||||||||||| | || ||| |||||||||||    
T  18667793 gaatcctacggtaccacatgcatctagaagagtatagaacattgcatgtacttattacttggtgagtcg 18667861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 20847467 - 20847372
Alignment:
Q  105 taagattatttttggaatccaat-ggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattga 199  Q
    ||||||||| |  |||||||||| ||||| ||||| |||||||| ||| |||||||||||||||||||| |  |||||||  ||||||||| ||||    
T  20847467 taagattatctccggaatccaattggtaccacatgtatctagaagagtctagaacattgcatgcatttgatcattggtgaaacgtgtcatacttga 20847372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 18713447 - 18713533
Alignment:
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    ||||||| ||||| | |||||| | ||||||| |||||||||||||| |||||| |||||| |||| | || ||| |||||||||||    
T  18713447 acggtaaaattatctctggaattctatggtaccacatgcatctagaagagtataaaacattacatgtacttattacttggtgagtcg 18713533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 15215511 - 15215579
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaata 202  Q
    ||||||||||||| ||| |||||||||||||| |||||  || ||| |||| |||||||||||||||||    
T  15215511 catgcatctagaagagtctagaacattgcatgtatttgagtaattgatgagccgtgtcataattgaata 15215579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 16569816 - 16569768
Alignment:
Q  253 tgttattttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||||||| |||||| ||||||| ||||||||||||| |||||||||    
T  16569816 tgttatttttggtgatatttgtacatttggtgattttaattgatgatgt 16569768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 19699238 - 19699320
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  19699238 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 19699320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 19709823 - 19709905
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  19709823 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 19709905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 34135790 - 34135972
Alignment:
Q  24 aatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatc 123  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||||| | ||||||     
T  34135790 aatgtaaaaggaggtgtacttttacataggtgaaatacgtaagaggaggtgtactcttacttgggtgtggattcaatacaataagattatctctggaatt 34135889  T
Q  124 caatggt-actacatgcatctaga--atagtatagaacattgcatgcatttgt-tagttggtgagtcgtgtcataattgaata 202  Q
    ||||  | || |||||||||||||  | |||  | ||||||||||| |||||  || ||||||||||||||||||||||||||    
T  34135890 caatttttaccacatgcatctagagaagagtccataacattgcatgtatttgaatatttggtgagtcgtgtcataattgaata 34135972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 22576619 - 22576492
Alignment:
Q  90 gtggattcaatacggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtg 189  Q
    |||||||||  ||||||| ||||| || |||| ||  |||||| ||||||||||| || ||| |||||||||||||||| |||||| ||| |||||||||    
T  22576619 gtggattcataacggtaaaattatcttcggaaccctttggtaccacatgcatctaaaagagtctagaacattgcatgcacttgttatttgatgagtcgtg 22576520  T
Q  190 tcataattgaataactgacttggtgaat 217  Q
    ||||| |||||||  ||||||| |||||    
T  22576519 tcatagttgaatatgtgacttgatgaat 22576492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 23157959 - 23157865
Alignment:
Q  126 atggtactacatgcatcta--gaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaata 218  Q
    ||||||| |||||||||||  ||| |||||| || |||  |||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  23157959 atggtaccacatgcatctatagaagagtataaaatattatatgcatttgttaattggtgagtcgtgtcataattgaataagtgatttggtgaata 23157865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 23569216 - 23569122
Alignment:
Q  126 atggtactacatgcatcta--gaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaata 218  Q
    ||||||| |||||||||||  ||| |||||| || |||  |||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  23569216 atggtaccacatgcatctatagaagagtataaaatattatatgcatttgttaattggtgagtcgtgtcataattgaataagtgatttggtgaata 23569122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 20272062 - 20271983
Alignment:
Q  2 agtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    ||||||||| |||| |||| ||||||||||| |||||||| |||||||||||||  ||  ||||||||||||||||||||||    
T  20272062 agtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacataggtg--atttgtaagaggatgtgtactcttac 20271983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 21652835 - 21652761
Alignment:
Q  144 agaatagtatagaacattgcatgcatttgt-tagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||| ||| ||||||||||||||||||||  || ||||||||||||||||||||||||||  |||||||||||||    
T  21652835 agaagagtctagaacattgcatgcatttgaatacttggtgagtcgtgtcataattgaatatgtgacttggtgaat 21652761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 45619705 - 45619788
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||| ||| ||||||||||||||||||||  | |||| ||| | ||||||||||||||||  |||||||||||||    
T  45619705 catgcatctagaagagtctagaacattgcatgcatttgaatggttgatgaattgtgtcataattgaatacgtgacttggtgaat 45619788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 22331202 - 22331123
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggt 213  Q
    ||||||||||||| ||| ||||||||||||||||||||  ||  || | ||||||||||||||||||||  |||||||||    
T  22331202 catgcatctagaagagtctagaacattgcatgcatttgaataactgataagtcgtgtcataattgaatatgtgacttggt 22331123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 7513687 - 7513769
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  7513687 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 7513769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 42180034 - 42180116
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || ||||| ||    |||||||||||||||  ||||||| ||||    
T  42180034 catgcatctagaagagtctagaacattgcatgcatttgattggttggcgaagtatgtcataattgaatatgtgacttgatgaa 42180116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 34136048 - 34136096
Alignment:
Q  241 ttgttgatgttttgttattttttgtgatacttgtacacttggtgatttta 290  Q
    |||||||||||| ||||||||| ||| | |||||||||||||||||||||    
T  34136048 ttgttgatgttt-gttatttttggtggtgcttgtacacttggtgatttta 34136096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 18994808 - 18994713
Alignment:
Q  126 atggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaatacgtg 222  Q
    ||||||| |||||||||||||| ||| |||| |||||||| || |||| | ||||||||||  |||||| |||| ||  ||| |||||| |||||||    
T  18994808 atggtaccacatgcatctagaagagtctagagcattgcataca-ttgtgatttggtgagtcaagtcatacttgattatatgaattggtgtatacgtg 18994713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 8325320 - 8325489
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaat 100  Q
    ||||||||||||||| |||| ||||||||||| ||| |||| ||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||     
T  8325320 tagtcatattaagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgggtgtggattcaa- 8325418  T
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcattt 171  Q
    || |||| ||||| || ||| ||| |||| || |||||||||||||  ||| ||||||||||||| |||||    
T  8325419 actgtaaaattatcttcggactcctatggcaccacatgcatctagatgagtctagaacattgcatacattt 8325489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 26427235 - 26427074
Alignment:
Q  56 aaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatccaa-tggtactacatgcatctagaatagtata 154  Q
    |||||| |||| ||| ||||||||||| |||||||||||||||||| ||||| ||||| || ||||||||| |||||| || ||||| ||||| ||| ||    
T  26427235 aaatacataagtggaggtgtactcttatgtgggtgtggattcaatatggtaaaattatcttcggaatccaattggtaccacgtgcatttagaagagtcta 26427136  T
Q  155 gaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    |||||||||||||| ||| ||  ||||||||||||||||| |||| ||  ||| ||||||||    
T  26427135 gaacattgcatgcacttgataactggtgagtcgtgtcatacttgactatgtgaattggtgaa 26427074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 6461336 - 6461468
Alignment:
Q  52 ggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatccaa-tggtactacatgcatctagaatag 150  Q
    ||||||||| ||||| ||| ||||||||||||||||| ||||||||||||||| || ||||| || |||||| || |||||| |||||||||| ||| ||    
T  6461336 ggtgaaatatgtaagtggaggtgtactcttacgtgggcgtggattcaatacggcaaaattatcttcggaatcgaattggtaccacatgcatcttgaagag 6461435  T
Q  151 tatagaacattgcatgcatttgttagttggtga 183  Q
    | || |||||| |||||||||| ||||||||||    
T  6461436 tctaaaacatttcatgcatttgatagttggtga 6461468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 9128915 - 9129014
Alignment:
Q  119 gaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||||||||| |||||||||||||| ||| |||||||||| |||||||||  || ||||||||||||||||||||||||||  |||||||||||||    
T  9128915 gaatccaatggtaccacatgcatctagaagagtctagaacattgtatgcatttgaatatttggtgagtcgtgtcataattgaatatgtgacttggtgaat 9129014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 45148260 - 45148180
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    ||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||| |  ||||||||| ||||||||||||    
T  45148260 tagtcatattaagtcatatgagaaatgtaaaaggaggtgtatttttacatagttgaatt--gtaagaggaggtgtactcttac 45148180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 39293365 - 39293458
Alignment:
Q  125 aatggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||  ||||||||||||| ||| ||||||||||||||||||||  || ||| ||||||||||||||||||||||  ||||||| |||||    
T  39293365 aatggtaccgcatgcatctagaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcataattgaatatgtgacttgatgaat 39293458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 14278125 - 14278215
Alignment:
Q  128 ggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||| |||||||| ||||| ||| ||||||||||||||||||||  || ||| ||||| ||||||||||||||||  ||||||| |||||    
T  14278125 ggtaccacatgcatttagaagagtctagaacattgcatgcatttgagtaattgatgagttgtgtcataattgaatatgtgacttgatgaat 14278215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 4072219 - 4072284
Alignment:
Q  136 atgcatctagaatagtatagaacattgcatgcattt-gttagttggtgagtcgtgtcataattgaa 200  Q
    |||||||||||| |||||||||||||||||||||||   |||||| |||||| |||||||||||||    
T  4072219 atgcatctagaagagtatagaacattgcatgcatttcaatagttgatgagtcatgtcataattgaa 4072284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 14974185 - 14974305
Alignment:
Q  126 atggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaatacgtg-at 224  Q
    ||||||| |||||||||||||||||| |||||||||||| |||||||  | ||||||||   |||||| ||| ||||  |||||||||||||| ||| ||    
T  14974185 atggtaccacatgcatctagaatagtctagaacattgcaagcatttg-aatttggtgagatatgtcatgattaaatatgtgacttggtgaatatgtgtat 14974283  T
Q  225 tggtaaaccttggtgattgttg 246  Q
    |||| ||  ||||||| |||||    
T  14974284 tggtgaaatttggtgaatgttg 14974305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 15403661 - 15403781
Alignment:
Q  126 atggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaatacgtg-at 224  Q
    ||||||| |||||||||||||||||| |||||||||||| |||||||  | ||||||||   |||||| ||| ||||  |||||||||||||| ||| ||    
T  15403661 atggtaccacatgcatctagaatagtctagaacattgcaagcatttg-aatttggtgagatatgtcatgattaaatatgtgacttggtgaatatgtgtat 15403759  T
Q  225 tggtaaaccttggtgattgttg 246  Q
    |||| ||  ||||||| |||||    
T  15403760 tggtgaaatttggtgaatgttg 15403781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 44306895 - 44306988
Alignment:
Q  125 aatggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||| |||||||| ||||| ||| ||||| ||||||||||||||  || ||| |||||||| |||||||||||||  ||||||| |||||    
T  44306895 aatggtaccacatgcatgtagaagagtctagaatattgcatgcatttgagtaattgatgagtcgtttcataattgaatatgtgacttgatgaat 44306988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 16065101 - 16065009
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattg-aataactgacttggtgaat 217  Q
    |||||| |||||||||||||| | | |||||||||||||| |||||  || |||||||||||||||| ||||| ||||  |||||||||||||    
T  16065101 tggtaccacatgcatctagaagattctagaacattgcatgaatttgaatatttggtgagtcgtgtcagaattgaaatatgtgacttggtgaat 16065009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 3172157 - 3172227
Alignment:
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcattt 171  Q
    ||||||| ||||| |  ||||||| ||||||| |||||||||||||| ||| || ||||||||||||||||    
T  3172157 acggtaaaattatctccggaatcctatggtaccacatgcatctagaagagtttaaaacattgcatgcattt 3172227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 16436378 - 16436464
Alignment:
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    ||||||| ||||| | |||||||| ||| ||| |||||||||||||| ||| |||||||| |||||||||| |   |||||||||||    
T  16436378 acggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcg 16436464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 3135871 - 3135831
Alignment:
Q  261 tttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  3135871 tttgttatacttgttcacttggtgattttaaatgatgatgt 3135831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 6210571 - 6210627
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtga 183  Q
    |||||| | |||||||||||| ||| |||||||||||||||||||| || |||||||    
T  6210571 tggtaccatatgcatctagaagagtctagaacattgcatgcatttgataattggtga 6210627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 16207099 - 16207030
Alignment:
Q  12 agtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||| |||| ||||||||||| |||||||| |||||||||| |||| |  ||||||||| ||||||||||||    
T  16207099 agtcatatgagaaatgtaaaaggaggtgtaattttacatagttgaatt--gtaagaggaggtgtactcttac 16207030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 45148119 - 45148036
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||| ||| ||||||||||||||||||||  | |||| ||| | |||||| ||||| |||  |||||||||||||    
T  45148119 catgcatctagaagagtctagaacattgcatgcatttgagtggttgatgaattgtgtcacaattggatatgtgacttggtgaat 45148036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 14252968 - 14253050
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  14252968 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 14253050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 14939475 - 14939398
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  14939475 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 14939398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 15367068 - 15366991
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  15367068 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 15366991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 12246510 - 12246473
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg 172  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  12246510 catgcatctagaagagtctagaacattgcatgcatttg 12246473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 14280024 - 14280151
Alignment:
Q  90 gtggattcaatacggtaagattatttttggaatccaat-ggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgt 188  Q
    ||||||||| |||||||||||||| |  |||||||||| ||||| ||||| || ||||   || ||||||||||||||||||||  ||||| |||   ||    
T  14280024 gtggattca-tacggtaagattatctccggaatccaattggtaccacatggatgtagagatgtctagaacattgcatgcatttg-aagttgatgaaatgt 14280121  T
Q  189 gtcataattgaataactgacttggtgaata 218  Q
    |||| | |||||||  ||||||||||||||    
T  14280122 gtcacacttgaatatgtgacttggtgaata 14280151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 15755926 - 15756003
Alignment:
Q  125 aatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaata 202  Q
    |||||||| ||||| || ||||| ||| |||||||||||| ||| |||||| ||| ||| ||| |||||| |||||||    
T  15755926 aatggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaata 15756003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 17151024 - 17151105
Alignment:
Q  90 gtggattcaatacggtaagattatttttggaatccaat-ggtactacatgcatctagaatagtatagaacattgcatgcatt 170  Q
    |||||||||| ||||| | ||||| |  |||||||||| ||||| ||||||||||| || ||| || |||||||||||||||    
T  17151024 gtggattcaaaacggttaaattatctccggaatccaattggtaccacatgcatctaaaagagtctaaaacattgcatgcatt 17151105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 17225414 - 17225477
Alignment:
Q  17 tatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  17225414 tatgtgaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 17225477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 53 - 199
Target Start/End: Complemental strand, 37278188 - 37278041
Alignment:
Q  53 gtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatacggtaagattatttttggaatccaa-tggtactacatgcatctagaatagt 151  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||| | |||| ||||| |  ||||||||| |||||| || || ||||| || |||    
T  37278188 gtgaaatacgtaagtggaggtgtactcttacgtgggtgtggattcaatgctgtaaaattatctccggaatccaattggtaccacgtgtatctaaaagagt 37278089  T
Q  152 atagaacattgcatgcatttgttagttggtgagtcgtgtcataattga 199  Q
     |||||||||||||||| ||| || ||||||||| |||||||| ||||    
T  37278088 ctagaacattgcatgcacttgataattggtgagttgtgtcatacttga 37278041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 37275896 - 37275770
Alignment:
Q  74 gtactcttacgtgggtgtggattcaatacggtaagattatttttggaatccaa-tggtactacatgcatctagaatagtatagaacattgcatgcatttg 172  Q
    |||||||||||||||||||||||||||||||||| ||||| |  ||||||||| |||||| ||||| || ||||| ||  |||||||||||||||| |||    
T  37275896 gtactcttacgtgggtgtggattcaatacggtaaaattatctccggaatccaattggtaccacatgtatttagaagagcctagaacattgcatgcacttg 37275797  T
Q  173 ttagttggtgagtcgtgtcataattga 199  Q
     || ||||||||| |||||||| ||||    
T  37275796 ataattggtgagttgtgtcatacttga 37275770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 25341001 - 25340907
Alignment:
Q  101 acggtaagattatttttggaatcc-aatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcata 194  Q
    ||||||| ||||| | |||||||| |||||||| |||||||||||||  ||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  25341001 acggtaaaattatctctggaatcctaatggtaccacatgcatctagatgagtctagaacattgcatgcatttgttaattggtgagtcgagtcata 25340907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 14343506 - 14343590
Alignment:
Q  128 ggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttg 211  Q
    ||||| |||||||||||||| ||| | ||||||||||||||||||  |||||| ||| ||||||||||||||||||  |||||||    
T  14343506 ggtaccacatgcatctagaagagtctggaacattgcatgcatttgaatagttgatgattcgtgtcataattgaatatgtgacttg 14343590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 11765058 - 11765141
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||||||| ||| ||||||||| ||||||||||  || ||| ||||||||||||||||||||||  ||||||| |||||    
T  11765058 catgcatctagaagagtctagaacatttcatgcatttgagtaattgatgagtcgtgtcataattgaatatgtgacttgatgaat 11765141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 16837007 - 16837082
Alignment:
Q  128 ggtactacatgcatctagaatagtatagaacattgcatgcattt-gttagttggtgagtcgtgtcataattgaata 202  Q
    |||||| ||||||||||||| ||| ||||||||||||||||||| | ||||   ||||||||||||||||||||||    
T  16837007 ggtactgcatgcatctagaagagtctagaacattgcatgcatttggatagtcaatgagtcgtgtcataattgaata 16837082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 19318120 - 19318181
Alignment:
Q  126 atggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    ||||||| |||||||||||||| ||| ||||||||| ||||||||| ||| |||||||||||    
T  19318120 atggtaccacatgcatctagaagagtctagaacattacatgcatttattatttggtgagtcg 19318181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 22949949 - 22949899
Alignment:
Q  251 tttgttattttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||| ||||||| |||||| ||||||||||||||||||||| |||||||||    
T  22949949 tttgatatttttggtgataattgtacacttggtgattttaattgatgatgt 22949899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 24082804 - 24082727
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  ||||||||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  24082804 gtcatatcgagtcgtatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 24082727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21108227 - 21108171
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaa 57  Q
    |||||||||| |||| |||| ||||||||||| |||||||| |||||||||| ||||    
T  21108227 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttgaa 21108171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 5622934 - 5622981
Alignment:
Q  4 tcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacata 51  Q
    ||||||| |||| |||| ||||||||||| ||||||||||||||||||    
T  5622934 tcatattgagtcatatgagaaatgtaaaaggaggtgtatttttacata 5622981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 29912747 - 29912670
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  29912747 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 29912670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 34937987 - 34937905
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  34937987 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 34937905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 26561292 - 26561368
Alignment:
Q  4 tcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    ||||||| |||| |||| ||||||||||| |||||||| |||||||||| ||   |  ||||||||||||||||| ||||    
T  26561292 tcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tttgtaagaggatgtgtacttttac 26561368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 19266931 - 19266830
Alignment:
Q  119 gaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcataattgaataactgacttggtgaata 218  Q
    |||||| |||||||||||||||||||||| ||| || |||| |||  | | |||| | ||||||||||| |||||| |||| ||  ||| |||||| |||    
T  19266931 gaatcctatggtactacatgcatctagaagagtctacaacaatgc--gtacttgtgatttggtgagtcgagtcatacttgattatgtgaattggtgtata 19266834  T
Q  219 cgtg 222  Q
    ||||    
T  19266833 cgtg 19266830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 299
Target Start/End: Complemental strand, 24192534 - 24192486
Alignment:
Q  251 tttgttattttttgtgatacttgtacacttggtgattttaaatgatgat 299  Q
    |||||||||||| |||| || || ||||||||||||||||| |||||||    
T  24192534 tttgttatttttggtgaaacatggacacttggtgattttaattgatgat 24192486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 79493 - 79315
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaatac 102  Q
    |||||||| |||| |||| ||||||||||| |||||||| | | |||||||| |||||||||  |||| ||  |||||||||||||||||| ||||| ||    
T  79493 gtcatattgagtcatatgagaaatgtaaaaggaggtgtactatcacataggtaaaatacgtagaaggaggtc-actcttacgtgggtgtgggttcaa-ac 79396  T
Q  103 ggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtga 183  Q
    ||||| ||| | || |||||| |||||||| | |||||||||||  | | |||||||||||| |||||||||| |||||||    
T  79395 ggtaaaattgtcttcggaatcgaatggtaccagatgcatctagatgaatctagaacattgcacgcatttgttaattggtga 79315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1487 - 1581
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggat 95  Q
    |||||||||| |||| |||| ||||||||||| ||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||    
T  1487 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacttaagaggaggtgtactcttacgtgggtggggat 1581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 14593 - 14675
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||  ||||||||||||    
T  14593 catgcatctagaatagtctagaacattgcatgcatttgaatagttgatgagtcgtgtcataattgaatatatgacttggtgaa 14675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 15508 - 15599
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||  ||||||| |||||    
T  15508 tggtaccacatgcatctagaagagtctagaacattgcatgcatttgaatagttgatgagtcgtgtcataattgaatatgtgacttgttgaat 15599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15392 - 15472
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||| || | |||| ||||||||||| | |||||| ||||||||||||||| |  ||||||||| ||||||||||||    
T  15392 tagtcatattgagccatatgagaaatgtaaaagggggtgtacttttacataggtgaatt--gtaagaggaggtgtactcttac 15472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 200814 - 200937
Alignment:
Q  119 gaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcat-aattgaataactgacttggtgaat 217  Q
    ||||||||| |||| |||||||||||||  ||| |||||||||||||||| |||||| ||||||||||||||||| |||| ||||| ||| ||||||| |    
T  200814 gaatccaatagtaccacatgcatctagaggagtctagaacattgcatgcacttgttaattggtgagtcgtgtcataaatttaataagtgatttggtgatt 200913  T
Q  218 acgtg-attggtaaaccttggtga 240  Q
    | ||| |||||| || ||||||||    
T  200914 atgtgcattggtgaaacttggtga 200937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 199542 - 199631
Alignment:
Q  2 agtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgt 91  Q
    ||||||||| |||| |||| ||||||||||| ||||||||  ||||||||||||||||||||| ||||| ||||| |||||| |||||||    
T  199542 agtcatattgagtcatatgagaaatgtaaaatgaggtgtacctttacataggtgaaatacgtaggaggaggtgtaatcttacatgggtgt 199631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21583 - 21663
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||| |||| |||| ||||| ||||| |||||||| |||||||||||||| ||  ||||||||||||||||||||||    
T  21583 tagtcatattgagtcatatgagaaatctaaaaggaggtgtaattttacataggtgagat--gtaagaggatgtgtactcttac 21663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 12630 - 12710
Alignment:
Q  138 gcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||||| ||| ||||||||||||||||||||  |||||| |||||||||| |||||||||||  ||||||| |||||    
T  12630 gcatctagaagagtctagaacattgcatgcatttgaatagttgatgagtcgtgtaataattgaatatgtgacttgttgaat 12710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 20255 - 20176
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggt 213  Q
    ||||||||||||| ||| ||||||||||||||||||||  || ||| ||||||||||||||||||| ||  |||||||||    
T  20255 catgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgattatgtgacttggt 20176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 10997 - 11080
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||| ||||||||| ||||| ||||||||||||||  |||||| |||||||| |||||||||||||  ||||||| |||||    
T  10997 catgcatgtagaatagtctagaatattgcatgcatttgaatagttgatgagtcgtatcataattgaatatatgacttgttgaat 11080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33396016 - 33395936
Alignment:
Q  1 tagtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||||| |||| |||| ||||||||||| |||||||| |||||||||| |||| |  ||||||||| ||||||||||||    
T  33396016 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttgaatt--gtaagaggaggtgtactcttac 33395936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 21199238 - 21199297
Alignment:
Q  128 ggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    ||||| |||||||||||||  ||| |||||||||||||||||||  || |||||||||||    
T  21199238 ggtaccacatgcatctagacgagtctagaacattgcatgcatttaatatttggtgagtcg 21199297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 20252734 - 20252652
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  20252734 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 20252652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 33395876 - 33395839
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg 172  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  33395876 catgcatctagaagagtctagaacattgcatgcatttg 33395839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 17022248 - 17022185
Alignment:
Q  17 tatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  17022248 tatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 17022185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 11577 - 11460
Alignment:
Q  127 tggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtg-agtcgtgtcataattgaataactgacttggtgaatacgtg-at 224  Q
    |||||| |||||||||||||| ||| ||||| |||||||||||||| || |||||| |  ||||||||| |||| ||  |||||||||||||| ||| ||    
T  11577 tggtaccacatgcatctagaagagtctagaatattgcatgcatttgataattggtgaaaacgtgtcatacttgactatgtgacttggtgaatatgtgcat 11478  T
Q  225 tggtaaaccttggtgatt 242  Q
    |||| || |||| |||||    
T  11477 tggtgaaacttgttgatt 11460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 36416 - 36509
Alignment:
Q  125 aatggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    ||||||||  ||||||| ||||| ||| ||||||||||||||||||||  |||| | || |||||||||||||||||||  ||||||| |||||    
T  36416 aatggtaccgcatgcatatagaagagtctagaacattgcatgcatttgaatagtcgatgggtcgtgtcataattgaatatgtgacttgttgaat 36509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 101105 - 101174
Alignment:
Q  125 aatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcgtgtcata 194  Q
    |||||||| |||||||||||||  ||| ||||||||||||||||||| ||| ||||| ||||| ||||||    
T  101105 aatggtaccacatgcatctagatgagtctagaacattgcatgcatttattaattggtaagtcgagtcata 101174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 11172 - 11080
Alignment:
Q  126 atggtactacatgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaat 217  Q
    |||||||  ||||||||| ||| ||| ||||||||||||||||||||  || ||| ||||||||||||| ||||||||  ||||||| |||||    
T  11172 atggtaccgcatgcatcttgaagagtctagaacattgcatgcatttgagtaattgatgagtcgtgtcatgattgaatatgtgacttgatgaat 11080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 5903 - 5836
Alignment:
Q  118 ggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagt 185  Q
    ||||||| ||||||| ||||||||||||||  || ||||||||||||||||||| ||| || ||||||    
T  5903 ggaatcctatggtaccacatgcatctagaagggtctagaacattgcatgcatttattatttagtgagt 5836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 6657 - 6734
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| ||||||||||||||||||| ||   | |||||||||| ||||||||||||    
T  6657 gtcatatcgagtcatatgtgaaatgtaaaaggaggtgtatttttacatagttg---tgcgtaagaggaggtgtactcttac 6734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 26008 - 26094
Alignment:
Q  101 acggtaagattatttttggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 187  Q
    ||||||| ||||| | |||||||| ||| ||| |||||||||||||| ||| |||||||| |||||||||| |   |||||||||||    
T  26008 acggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcg 26094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 171 - 250
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggt 213  Q
    ||||||||||||| ||| ||||||||||||||||||||  ||   | | ||||||||||||||||||||  |||||||||    
T  171 catgcatctagaagagtctagaacattgcatgcatttgaataaaagataagtcgtgtcataattgaatatgtgacttggt 250  T

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Target: scaffold0357 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 6428 - 6351
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  6428 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 6351  T

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Target: scaffold0138 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 26842 - 26760
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg-ttagttggtgagtcgtgtcataattgaataactgacttggtgaa 216  Q
    ||||||||||||| ||| |||||||||||||||||||| || |||| |||    |||||||||||||||  ||||||| ||||    
T  26842 catgcatctagaagagtctagaacattgcatgcatttgattggttgatgaagtatgtcataattgaatatgtgacttgatgaa 26760  T

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Target: scaffold0138; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 27857 - 27820
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg 172  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  27857 catgcatctagaagagtctagaacattgcatgcatttg 27820  T

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Target: scaffold0138; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 39853 - 39816
Alignment:
Q  135 catgcatctagaatagtatagaacattgcatgcatttg 172  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  39853 catgcatctagaagagtctagaacattgcatgcatttg 39816  T

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Target: scaffold0107 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 12133 - 12056
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||||||  |||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  12133 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 12056  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 63963 - 64040
Alignment:
Q  3 gtcatattaagtcgtatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    ||||||| ||||| |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||| ||||||||    
T  63963 gtcatatcaagtcatatgtgaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgaactcttac 64040  T

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Target: scaffold0028; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 39977 - 40036
Alignment:
Q  241 ttgttgatgttttgttattttttgtgatacttgtacacttggtgattttaaatgatgatgt 301  Q
    |||||||||||| ||||||  | |||||||||||||| ||| ||||||||| |||||||||    
T  39977 ttgttgatgttt-gttattaatggtgatacttgtacatttgatgattttaattgatgatgt 40036  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 256037 - 256083
Alignment:
Q  126 atggtactacatgcatctagaatagtatagaacattgcatgcatttg 172  Q
    |||||||  ||||||||||||| ||| ||||||||||||||||||||    
T  256037 atggtaccgcatgcatctagaagagtctagaacattgcatgcatttg 256083  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 68183 - 68120
Alignment:
Q  17 tatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  68183 tatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 68120  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 29787 - 29724
Alignment:
Q  17 tatgcgaaatgtaaaaagaggtgtatttttacataggtgaaatacgtaagaggatgtgtactcttac 83  Q
    |||| ||||||||||| |||||||| |||||||||| ||   | |||||||||| ||||||||||||    
T  29787 tatgagaaatgtaaaatgaggtgtacttttacatagttg---tgcgtaagaggaggtgtactcttac 29724  T

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