View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10365_high_4 (Length: 475)

Name: NF10365_high_4
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10365_high_4
NF10365_high_4
[»] chr8 (6 HSPs)
chr8 (11-448)||(42469077-42469515)
chr8 (279-408)||(42475349-42475479)
chr8 (285-426)||(42463586-42463727)
chr8 (144-248)||(42475531-42475635)
chr8 (277-415)||(42489910-42490048)
chr8 (145-210)||(42463879-42463944)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 42469515 - 42469077
Alignment:
Q  11 cagagattcgtcg-agtttggtgttgatccaagtaaatgtaagtgtgtaattctttaatactttaaatgtaagtatgtttatatattactttaattgtat 109  Q
    ||||||||||||  |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42469515 cagagattcgtctcagtttgatattgatccaagtaaatgtaagtgtgtaattctttaatactttaaatgtaagtatgtttatatattactttaattgtat 42469416  T
Q  110 ttggtatggtagaataagattgtacaatataaagtgagatggcttaatcataaagtggcagttataagggaaatgatactgaacacaattcttggattct 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42469415 ttggtatggtagaataagattgtacaatataaagtgagatggcttaatcatacagtggcagttataagggaaatgatactgaacacaattcttggattct 42469316  T
Q  210 ttcaaactttggttcatttgttttagaataaggaaacaaagagtaaagaaatttggctcatttgtcttgattatgtaatattgctgattcaattttcctc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42469315 ttcaaactttggttcatttgttttagaataaggaaacaaagagtaaagaaatttggctcatttgtcttgattatgtaatattgctgattcaattttcctc 42469216  T
Q  310 ccttggcagacaagttcacggttgtcttttcttgaggctcttgagggttccgtttccaagtctgaggagtccatacaagatgagcaggatttaagatctc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42469215 ccttggcagacaagttcacggttgtcttttcttgaggctcttgagggttccgtttccaagtctgaggagtccatacaagatgagcaggatttaagatctc 42469116  T
Q  410 aatcttctaacaatcattgctgtattgatgaatctaagt 448  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  42469115 aatcttctaacaatcattgctgtattgatgaatttaagt 42469077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 279 - 408
Target Start/End: Complemental strand, 42475479 - 42475349
Alignment:
Q  279 attatgtaatattgctgattcaattttcctcccttggcagacaagttcacggtt--gtcttttcttgaggctcttgagggttccgtttccaagtctgagg 376  Q
    ||||| |||||||||||||||||||||||||| ||| |||||||||||||||||  ||||||| | ||||||||||||||||| |||||||| |||||||    
T  42475479 attatttaatattgctgattcaattttcctcctttg-cagacaagttcacggttttgtcttttgtcgaggctcttgagggttctgtttccaaatctgagg 42475381  T
Q  377 agtccatacaagatgagcaggatttaagatct 408  Q
    | | || ||||||| | |||||||||| ||||    
T  42475380 aattcagacaagattatcaggatttaaaatct 42475349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 285 - 426
Target Start/End: Complemental strand, 42463727 - 42463586
Alignment:
Q  285 taatattgctgattcaattttcctcccttggcagacaagttcacggttgtcttttcttgaggctcttgagggttccgtttccaagtctgaggagtccata 384  Q
    ||||| |||||||||||||| || |||||  ||||||| ||||  ||| |||||||| || ||| |||||| ||| ||||||||||||||||| ||   |    
T  42463727 taataatgctgattcaatttccccccctttacagacaaattcaacgttatcttttctagatgcttttgaggattctgtttccaagtctgaggaatctgga 42463628  T
Q  385 caagatgagcaggatttaagatctcaatcttctaacaatcat 426  Q
    |||||||| |||||||||||||||||||||| |||| |||||    
T  42463627 caagatgaccaggatttaagatctcaatcttgtaaccatcat 42463586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 42475635 - 42475531
Alignment:
Q  144 tgagatggcttaatcataaagtggcagttataagggaaatgatactgaacacaattcttggattctttcaaactttggttcatttgttttagaataagga 243  Q
    |||||| ||||| ||||| |||||||||||||||||||||| |||||| |||||| |||| ||||||||||||||  | |||| |||||||||| |||||    
T  42475635 tgagatagcttagtcatatagtggcagttataagggaaatggtactgatcacaatacttgaattctttcaaacttctgctcatgtgttttagaagaagga 42475536  T
Q  244 aacaa 248  Q
    |||||    
T  42475535 aacaa 42475531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 415
Target Start/End: Complemental strand, 42490048 - 42489910
Alignment:
Q  277 tgattatgtaatattgctgattcaattttcctcccttggcagacaagttcacggtt--gtcttttcttgaggctcttgagggttccgtttccaagtctga 374  Q
    ||||||| | |||||||||||||  ||||||  ||||||||||||||||||| |||  ||| ||||| ||||||||||||| ||| || |||||||||||    
T  42490048 tgattatttcatattgctgattctgttttcc--ccttggcagacaagttcacagttttgtcatttctggaggctcttgaggattctgtctccaagtctga 42489951  T
Q  375 ggagtccatacaagatgagcaggatttaagatctcaatctt 415  Q
    ||| || |  ||||| || ||||| |||| |||||||||||    
T  42489950 ggaatctaggcaagacgatcaggaattaatatctcaatctt 42489910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 42463944 - 42463879
Alignment:
Q  145 gagatggcttaatcataaagtggcagttataagggaaatgatactgaacacaattcttggattctt 210  Q
    ||||| |||||| |||| |||| | ||||||||||||||| |||||||||| || |||||| ||||    
T  42463944 gagatagcttaagcatagagtgacggttataagggaaatgctactgaacacgatacttggagtctt 42463879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University