View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10365_high_44 (Length: 303)

Name: NF10365_high_44
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10365_high_44
NF10365_high_44
[»] chr7 (3 HSPs)
chr7 (97-293)||(11504425-11504622)
chr7 (97-300)||(18939788-18939987)
chr7 (197-250)||(24760519-24760572)
[»] chr6 (3 HSPs)
chr6 (97-267)||(20909730-20909899)
chr6 (97-267)||(20924178-20924347)
chr6 (126-300)||(27445062-27445236)
[»] chr1 (1 HSPs)
chr1 (97-267)||(41326624-41326794)
[»] scaffold0003 (2 HSPs)
scaffold0003 (126-300)||(42122-42296)
scaffold0003 (126-300)||(35452-35625)
[»] chr8 (2 HSPs)
chr8 (97-267)||(42312844-42313014)
chr8 (120-297)||(43227134-43227309)
[»] chr3 (3 HSPs)
chr3 (197-297)||(52310804-52310904)
chr3 (197-297)||(53689993-53690093)
chr3 (197-250)||(52127954-52128007)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 293
Target Start/End: Complemental strand, 11504622 - 11504425
Alignment:
Q  97 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 196  Q
    |||||| |||||| |||||||||| ||| |||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||            
T  11504622 tcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtggttttaaattttttt 11504523  T
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaatt-caatgttctcgtagcctctttctatagattttcaagctaactttgaaacac 293  Q
    ||||||||||| ||||||||| ||  ||||||||||||||||||||  | || |||| ||||||||||||||||||||||||||| ||||||||||||    
T  11504522 aacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttcaagctcactttgaaacac 11504425  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 18939788 - 18939987
Alignment:
Q  97 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 196  Q
    |||| |||||||| |||||| | | ||| ||||||||  ||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||              
T  18939788 tcaattaagacgtcttcgat-ataaagatatcttccttccaaacaacacttgattctaaaactcttgattcatcatatgttagtgttttt----tttttt 18939882  T
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaat-gttctcgtagcctctttctatagattttcaagctaactttgaaacacca 295  Q
    |||||||||||  || ||||||||  ||||||||||||||||||||   | | |||| ||||||||||||||||||||||||||| |||||||||||||     
T  18939883 aacatagaacacaaacctctaagaaaattcaaaaagcaagtgaattgttttggtctcatagcctctttctatagattttcaagctcactttgaaacaccg 18939982  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 24760572 - 24760519
Alignment:
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttc 250  Q
    ||||||||||| ||||| |||| | || |||||| |||||||||||||||||||    
T  24760572 aacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 24760519  T

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Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 20909730 - 20909899
Alignment:
Q  97 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 196  Q
    ||||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||| ||||| |||||            
T  20909730 tcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtgg-tttaattttttct 20909828  T
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 267  Q
    ||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20909829 aacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 20909899  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 20924178 - 20924347
Alignment:
Q  97 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 196  Q
    ||||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||| ||||| |||||            
T  20924178 tcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcagtgg-tttaattttttct 20924276  T
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 267  Q
    ||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20924277 aacttagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 20924347  T

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Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 126 - 300
Target Start/End: Complemental strand, 27445236 - 27445062
Alignment:
Q  126 atcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnngaacatagaacaacaaactctaagatgatt 225  Q
    |||||||| |||| ||||| ||| |||||||| | |||||||||| |||||||||||||||||        ||||||||||| |||||||||||| ||||    
T  27445236 atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagatt 27445137  T
Q  226 caaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaaactc 300  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||| ||||| ||||||    
T  27445136 caaaaagcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactc 27445062  T

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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 41326624 - 41326794
Alignment:
Q  97 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 196  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||||||||||||| |||||||| |             
T  41326624 tcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattctaaaactcttgcttcatcatatggcagtggtttaatttttttct 41326723  T
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 267  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  41326724 aacatagaacaccaaactataagaagattcaaaaagcaagtgaattcaatgttcttatagcctctttctat 41326794  T

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Target: scaffold0003 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 126 - 300
Target Start/End: Original strand, 42122 - 42296
Alignment:
Q  126 atcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnngaacatagaacaacaaactctaagatgatt 225  Q
    |||||||| |||| ||||| ||| |||||||| | |||||||||| |||||||||||||||||        ||||||||||| |||||||||||| ||||    
T  42122 atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttttaacatagaacaccaaactctaagaagatt 42221  T
Q  226 caaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaaactc 300  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||| ||||| ||||||    
T  42222 caaaaagcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactc 42296  T

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Target: scaffold0003; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 126 - 300
Target Start/End: Original strand, 35452 - 35625
Alignment:
Q  126 atcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnngaacatagaacaacaaactctaagatgatt 225  Q
    |||||||| |||| ||||| ||| |||||||| | |||||||||| |||||||||||||||||        ||||||||||| |||||||  ||| ||||    
T  35452 atcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggttttaattttttt-aacatagaacaccaaactcatagaagatt 35550  T
Q  226 caaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaaactc 300  Q
    ||||||||||||||| ||||||||||| |||| ||||| |||||||||||||||| |||||| ||||| ||||||    
T  35551 caaaaagcaagtgaactcaatgttctcatagcatctttgtatagattttcaagctcactttgtaacactaaactc 35625  T

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Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 267
Target Start/End: Original strand, 42312844 - 42313014
Alignment:
Q  97 tcaagtaagacgtattcgattacagagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnng 196  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||| | |||||||||||| ||||| |||||||| |             
T  42312844 tcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcagtggtttaatttttttct 42312943  T
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctat 267  Q
    ||||||||||| |||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||    
T  42312944 aacatagaacaccaaactataagaagatacaaaaagcaagtgaattcaatgtactcgtagcctctttctat 42313014  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 297
Target Start/End: Complemental strand, 43227309 - 43227134
Alignment:
Q  120 agagagatcttcctatcaaacaacacttgcttctaaaattcttgcttcatcatatggtagtggttttaannnnnnngaacatagaacaacaaactctaag 219  Q
    ||||| |||||||| ||||| |||||||| |||||||| |||||||||||| ||||||||| |||||||        ||||||||||| ||||||| | |    
T  43227309 agagatatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatggtagtagttttaattttttt-aacatagaacaccaaactcaatg 43227211  T
Q  220 atgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaaa 297  Q
    | |||||||||| |||||||||||||||||||| |||| |||||||||| ||| ||||||| |||||| |||||||||    
T  43227210 a-gattcaaaaatcaagtgaattcaatgttctcatagcatctttctatatattctcaagctcactttgtaacaccaaa 43227134  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 52310804 - 52310904
Alignment:
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaa 296  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  52310804 aacatagaacaccaaactctaagaagattcaaaaagaaagtgaatttaatgttctcatagcctctttctatagattttcaagctcactttgaaacaccaa 52310903  T
Q  297 a 297  Q
    |    
T  52310904 a 52310904  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 53690093 - 53689993
Alignment:
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttctcgtagcctctttctatagattttcaagctaactttgaaacaccaa 296  Q
    ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||    
T  53690093 aacatagaacaccaaactctaagaagattcaaaaagaaagtgaattcaatgttctcatagcatctttctatagattttcaagctcactttgaaacaccaa 53689994  T
Q  297 a 297  Q
    |    
T  53689993 a 53689993  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 52128007 - 52127954
Alignment:
Q  197 aacatagaacaacaaactctaagatgattcaaaaagcaagtgaattcaatgttc 250  Q
    ||||||||||| ||||| |||| | || |||||| |||||||||||||||||||    
T  52128007 aacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaattcaatgttc 52127954  T

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