View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10365_high_5 (Length: 445)
Name: NF10365_high_5
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 216 - 445
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
216 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
|
| Q |
316 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
|
| Q |
416 |
gtttggtagtttcaactttcaagttgagat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 32268548 - 32268668
Alignment:
| Q |
1 |
ataatagtacaatgagctacttaaaatgagtcttgatttggatttcaagtgttgaacggaaatattaattgttatacatgtttcgcatgattaatgagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32268548 |
ataatagtacaatgagctacttaaaatgagtcttgatttggatttcaagtgttgaacggaaatattaattgttatacatgtttcgcatgattaatgagtt |
32268647 |
T |
|
| Q |
101 |
aaacaacttgctgctcctgac |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32268648 |
aaacaacttgctgctcctgac |
32268668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 32274865 - 32274948
Alignment:
| Q |
33 |
ttgatttggatttcaagtgttgaacggaaatattaattgttatacatgtttcgcatgatta--atgagttaaacaacttgctgct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
32274865 |
ttgatttggatttcaagtgttgaacggaag-attaattgttatacatgtttcgcatgattaatatgagttaaataactcgctgct |
32274948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 32808655 - 32808697
Alignment:
| Q |
11 |
aatgagctacttaaaatgagtcttgatttggatttcaagtgtt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32808655 |
aatgagctacttaaaatgagtcttgattgggatttcaagtgtt |
32808697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 32274819 - 32274859
Alignment:
| Q |
48 |
agtgttgaacggaaatattaattgttatacatgtttcgcat |
88 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32274819 |
agtgttgaacggaacgattaattgttatacatgtttcgcat |
32274859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 32808703 - 32808750
Alignment:
| Q |
70 |
tgttatacatgtttcgcatgatta--atgagttaaacaacttgctgct |
115 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
32808703 |
tgttatacatgtttcgcatgtttaatatgagttaaataacttgctgct |
32808750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University