View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10365_high_6 (Length: 402)
Name: NF10365_high_6
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 26 - 376
Target Start/End: Original strand, 51740922 - 51741272
Alignment:
| Q |
26 |
tcaagtatcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggtt |
125 |
Q |
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| T |
51740922 |
tcaagtatcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggtt |
51741021 |
T |
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| Q |
126 |
cttagacacgcaccttgttcagtaggtgttattatcgaaagagggatgtctaaggtccctggtttctcacagttgattacatctgatagtacgaaaaacg |
225 |
Q |
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| T |
51741022 |
cttagacacgcaccttgttcagtaggtgttattatcgaaagagggatgtctaaggtccctggtttctcacaattgattacatctgatagtacgaaaaacg |
51741121 |
T |
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| Q |
226 |
ttgcaacacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcagann |
325 |
Q |
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| T |
51741122 |
ttgcaacacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcagatt |
51741221 |
T |
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| Q |
326 |
nnnnnngtcttcgtctttgtcacataaagaacatattgaaagtggagtaca |
376 |
Q |
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| T |
51741222 |
ttttttgtcttcgtctttgtcacataaagaacatattgaaagtggagtaca |
51741272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 10201720 - 10201863
Alignment:
| Q |
26 |
tcaagtatcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggtt |
125 |
Q |
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| T |
10201720 |
tcaagtatcgattattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggtt |
10201819 |
T |
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| Q |
126 |
cttagacacgcaccttgttcagtaggtgttattatcgaaagagg |
169 |
Q |
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| T |
10201820 |
cttaggcatgcaccttgttctgtcggtgtaattatagaaagagg |
10201863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 319
Target Start/End: Original strand, 10201914 - 10202013
Alignment:
| Q |
220 |
aaaacgttgcaacacttttctttggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcat |
319 |
Q |
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| T |
10201914 |
aaaatgttgcaacacttttttttggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgccctcgaattaacttgacaatcat |
10202013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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