View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10365_high_7 (Length: 395)
Name: NF10365_high_7
Description: NF10365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10365_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 173 - 378
Target Start/End: Complemental strand, 4602518 - 4602313
Alignment:
| Q |
173 |
gttagaatgaggtagtaaggattaaggaacgcaacttttccattatttgattgatttataactctcatcatcattgaattaaataaaatataatgagatt |
272 |
Q |
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| T |
4602518 |
gttagaatgaggtagtaaggattaaggaacgcaacttttccattatttgattgatttataactctcatcatcattaaattaaataaaatataatgagatt |
4602419 |
T |
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| Q |
273 |
tattaaaggaggctaatttacttatacacagagagcatttaaaaggttagaaaaggtggggaaatcccctaaattctaaaattgtaagcttctttatgat |
372 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4602418 |
tattaaaggaggctaatttacttatacacatagagcatttaaaaggttagaaaaggtggggaaatcccctaaattctaaaattttaagcttctttatgat |
4602319 |
T |
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| Q |
373 |
gatgtc |
378 |
Q |
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|||||| |
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| T |
4602318 |
gatgtc |
4602313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 4603303 - 4603151
Alignment:
| Q |
28 |
tgtagatgaagaaaatgaggtgtattggtattggaaattggaaacgtggaatattggtcatgcatgcacccaacttttacatagaaagagtcatgtgaaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4603303 |
tgtagatgaagaaaatgaggtgtattggtattggaaattggaaacgtggaatattggtcatgcatgcacccaacttttacatagaaagagtcatgtgaaa |
4603204 |
T |
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| Q |
128 |
caatgtccttagacacttgtttaaggatccagtatccaaactaatgttagaat |
180 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4603203 |
caatgcccttagacacttgtttaaggattcagtatccaaactaatgttagaat |
4603151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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