View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10366_high_1 (Length: 728)
Name: NF10366_high_1
Description: NF10366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10366_high_1 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 29269028 - 29269417
Alignment:
| Q |
30 |
atttccacataaaaagaagtgtaaatgaacattatggatcaaaaatttgaatgttataagtgaagtgcttacagttttaattgattccacattcaaactt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29269028 |
atttccacataaaaagaagtgtaaatgaacattatggatcaaaaatttgaatgttataagtgaagtgcttacagttttaattgattccacattcaaactt |
29269127 |
T |
|
| Q |
130 |
gtgcttttttctatagggcctacaataaattnnnnnnnnnnnnnnncattaacatacacaattaaatatgaattcatcaacagttgaagacataaaaaa- |
228 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
29269128 |
gtgcttttttctatagggcctacaataaattagaaaaaagaaaaa-cattaacatacacaattaaatatgaattcttcaacagttgaagaaataaaaaaa |
29269226 |
T |
|
| Q |
229 |
-cctgggatctataaccgactgaagttcaggtggatcgataaagattggaagccaacgtattaccataatacgttgtgacaacatgaacggcagtgattg |
327 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29269227 |
ccctgggatctataaccgactgaagttcaggtggatcggtaaagattggaagctaacgtattaccataatacgttgtgacaacatgaacaaaagtgattg |
29269326 |
T |
|
| Q |
328 |
acaatccaatccataaggaaatctcttttgcatgacataagagttttgactaacatgttcttactaacccttcacccataattataaaagt |
418 |
Q |
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| T |
29269327 |
acaatccaatccataaggaaatctcttttgcatgacataagagttttgactaacatgttcttactaacccttcacccataattataaaagt |
29269417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 445 - 682
Target Start/End: Original strand, 29269491 - 29269731
Alignment:
| Q |
445 |
gtttgatgtggaaattgccatttagaatttagctaaacttggtttcaaatgccatatacattgaaatacaaaatgtcatgttatcatagttaataatcaa |
544 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29269491 |
gtttgatgtggaaattgccatttagaatttggctaaacttggtatcaaatgccatatacattgaaatacaaaatgtcatgttatcatagttaataatcaa |
29269590 |
T |
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| Q |
545 |
acactatttaatttgagaaatggatcattggacagaggtttggttgaaacatcagttggtatcacaatatgtacatactcttgtattattaaaagcaaat |
644 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29269591 |
acactatttaatttgagaaatggatcattggacagaggtttcgttgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaat |
29269690 |
T |
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| Q |
645 |
ta---atacatacatatgttgttgctgctacacaggttctg |
682 |
Q |
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|| || |||||||||||||||||||||||||| |||||| |
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| T |
29269691 |
taatcatgcatacatatgttgttgctgctacacaagttctg |
29269731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 445 - 682
Target Start/End: Complemental strand, 18319 - 18079
Alignment:
| Q |
445 |
gtttgatgtggaaattgccatttagaatttagctaaacttggtttcaaatgccatatacattgaaatacaaaatgtcatgttatcatagttaataatcaa |
544 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18319 |
gtttgatgtggaaattgccatttagaatttggctaaacttggtatcaaatgccatatacattgaaatacaaaatgtcatgttatcatagttaataatcaa |
18220 |
T |
|
| Q |
545 |
acactatttaatttgagaaatggatcattggacagaggtttggttgaaacatcagttggtatcacaatatgtacatactcttgtattattaaaagcaaat |
644 |
Q |
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|||||| |||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18219 |
acactaattaatttgagaaatggatcattggacagtgatttggttgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaat |
18120 |
T |
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| Q |
645 |
ta---atacatacatatgttgttgctgctacacaggttctg |
682 |
Q |
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| T |
18119 |
taatcatacatacatatgttgttgctgctacacaagttctg |
18079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 445 - 682
Target Start/End: Original strand, 27713625 - 27713865
Alignment:
| Q |
445 |
gtttgatgtggaaattgccatttagaatttagctaaacttggtttcaaatgccatatacattgaaatacaaaatgtcatgttatcatagttaataatcaa |
544 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27713625 |
gtttgatgtggaaattgccatttagaatttggctaaacttggtatcaaatgccatatacattgaaatacaaaatgtcatgttatcatagttaataatcaa |
27713724 |
T |
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| Q |
545 |
acactatttaatttgagaaatggatcattggacagaggtttggttgaaacatcagttggtatcacaatatgtacatactcttgtattattaaaagcaaat |
644 |
Q |
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|||||| |||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27713725 |
acactaattaatttgagaaatggatcattggacagtgatttggttgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaat |
27713824 |
T |
|
| Q |
645 |
ta---atacatacatatgttgttgctgctacacaggttctg |
682 |
Q |
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|| ||||||||||||||||||||||||||||| |||||| |
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| T |
27713825 |
taatcatacatacatatgttgttgctgctacacaagttctg |
27713865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 26641672 - 26641616
Alignment:
| Q |
318 |
gcagtgattgacaatccaatccataaggaaatctcttttgcatgacataagagtttt |
374 |
Q |
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| T |
26641672 |
gcagtgatagacaatccgatccataaggaaatatcttttgcaagacataagagtttt |
26641616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 26747638 - 26747582
Alignment:
| Q |
318 |
gcagtgattgacaatccaatccataaggaaatctcttttgcatgacataagagtttt |
374 |
Q |
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|||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||| |
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| T |
26747638 |
gcagtgatagacaatccgatccataaggaaatatcttttgcaagacataagagtttt |
26747582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 603 - 682
Target Start/End: Complemental strand, 26890913 - 26890831
Alignment:
| Q |
603 |
gtatcacaatatgtacatactcttgtattattaaaagcaaatta---atacatacatatgttgttgctgctacacaggttctg |
682 |
Q |
| |
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||||||||||||||||| ||||||||| | |||||||||||||| |||||||||| ||||| |||||||||| | |||||| |
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| T |
26890913 |
gtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcatacatacatgtgttgctgctgctacataagttctg |
26890831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 648
Target Start/End: Original strand, 27651852 - 27651897
Alignment:
| Q |
603 |
gtatcacaatatgtacatactcttgtattattaaaagcaaattaat |
648 |
Q |
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||||| ||||||||||| ||||||||||| ||||||||||||||| |
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| T |
27651852 |
gtatcgcaatatgtacaaactcttgtattcgtaaaagcaaattaat |
27651897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 657
Target Start/End: Original strand, 18650319 - 18650365
Alignment:
| Q |
610 |
aatatgtacatactcttgtattattaaaagcaaattaatacatacata |
657 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
18650319 |
aatatgtacatactcttgtattcttaaaagcaatttaat-catacata |
18650365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 657
Target Start/End: Original strand, 18682737 - 18682783
Alignment:
| Q |
610 |
aatatgtacatactcttgtattattaaaagcaaattaatacatacata |
657 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
18682737 |
aatatgtacatactcttgtattcttaaaagcaatttaat-catacata |
18682783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 657
Target Start/End: Original strand, 18718539 - 18718584
Alignment:
| Q |
611 |
atatgtacatactcttgtattattaaaagcaaattaatacatacata |
657 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
18718539 |
atatgtacatactcttgtattcttaaaagcaatttaat-catacata |
18718584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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