View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10366_high_13 (Length: 346)
Name: NF10366_high_13
Description: NF10366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10366_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 18044174 - 18044370
Alignment:
| Q |
21 |
acatcatcaccactttccaagttgttgagagtatgagctgttcgattgcaactgaaagcatgaacaagataactgtttgcttaagtacaagggttgttct |
120 |
Q |
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| T |
18044174 |
acatcatcaccactttccaagttgttgagagtatgagttgttcgattgcaactggaaacaagaaaaagataacctttcacttaagtacaagggttgttct |
18044273 |
T |
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| Q |
121 |
atacgataggtttctaattcatcaatatgggttgactttatctaagtctgatgagatcaataagccaaggcttgactctactcgcttggttggtgag |
217 |
Q |
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| T |
18044274 |
agacaatagctttctaattcatcaatatgggttgactttgtctaagtctgaagagatcaacaagcaaaggcttgactctactcgcttggttggtgag |
18044370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 18044453 - 18044499
Alignment:
| Q |
300 |
aaagatttcattggtcttttgactgcgctgcattacgagtgtgtctc |
346 |
Q |
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| T |
18044453 |
aaagatttcattggtttgttgactgcgctgcattacgagtgtgtctc |
18044499 |
T |
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