View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10366_high_16 (Length: 334)
Name: NF10366_high_16
Description: NF10366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10366_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 58 - 313
Target Start/End: Complemental strand, 25450888 - 25450633
Alignment:
| Q |
58 |
gtgatattcctataaaataacaaaggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatca |
157 |
Q |
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| T |
25450888 |
gtgatatttctaataattaacaaaggctaatatatttctgctatattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatca |
25450789 |
T |
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| Q |
158 |
aatgcatttacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacag |
257 |
Q |
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| T |
25450788 |
aatgcatttacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacag |
25450689 |
T |
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| Q |
258 |
ttgatcctaaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
313 |
Q |
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| T |
25450688 |
ttgatcctaaacaataatagttatgcatgaattaagggaagtcaacagtgatgatg |
25450633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 75 - 313
Target Start/End: Complemental strand, 25446308 - 25446070
Alignment:
| Q |
75 |
taacaaaggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcatttacataata |
174 |
Q |
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| T |
25446308 |
taacaaaggctaatatatttctgctatattttacacacggttgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
25446209 |
T |
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| Q |
175 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaaacaataa |
274 |
Q |
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| T |
25446208 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacaattgatcctaaacaataa |
25446109 |
T |
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| Q |
275 |
tagttatgcatgaattaagggaagtcaacaatgatgatg |
313 |
Q |
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| T |
25446108 |
tagttatgcatgaattaagggaagtcaacagtgatgatg |
25446070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 68 - 313
Target Start/End: Original strand, 2606833 - 2607080
Alignment:
| Q |
68 |
tataaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcatt |
165 |
Q |
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| T |
2606833 |
tataaaataacaaaggctaatatatttctgctatatattttacacatggctgtacaaggctttatagatgtccaagctttacaaggtaatcaaatgcatt |
2606932 |
T |
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| Q |
166 |
tacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcct |
265 |
Q |
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| T |
2606933 |
tacataataattaaatgcattgaattggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactaactaatgacaattgatcct |
2607032 |
T |
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| Q |
266 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
313 |
Q |
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| T |
2607033 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
2607080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 31669466 - 31669504
Alignment:
| Q |
29 |
atcatcatatacccacaattcatagtttagtgatattcc |
67 |
Q |
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| T |
31669466 |
atcatcatatacccacaattcatagtttagtgatattcc |
31669504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 68 - 313
Target Start/End: Complemental strand, 31901621 - 31901374
Alignment:
| Q |
68 |
tataaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcatt |
165 |
Q |
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||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31901621 |
tataaaataacaaaggctaatatatttatgctatatcttttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt |
31901522 |
T |
|
| Q |
166 |
tacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcct |
265 |
Q |
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| T |
31901521 |
tacataataattaaatgcattgaatgggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaactttactgactaatgacagttgatcat |
31901422 |
T |
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| Q |
266 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
313 |
Q |
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| T |
31901421 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
31901374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 70 - 313
Target Start/End: Complemental strand, 31925485 - 31925241
Alignment:
| Q |
70 |
taaaataacaaaggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcattta |
167 |
Q |
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||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
31925485 |
taaaataacaaaggctaatatatttatgctatatcttttacacacggttgtacaaggctttatagttgtccaagctttacaaggtaatcaaatgcattta |
31925386 |
T |
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| Q |
168 |
cataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaa |
267 |
Q |
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| T |
31925385 |
cataataattaaatttattga-ttggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaactgtactgactaatgacagttgatcctaa |
31925287 |
T |
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| Q |
268 |
acaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31925286 |
acaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
31925241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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