View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10366_high_2 (Length: 534)
Name: NF10366_high_2
Description: NF10366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10366_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 23939788 - 23939286
Alignment:
| Q |
1 |
ctagtttggttgtggttttgcttaactttctgttgttttttaatgttattgctactcccatactgaccgcctttccgtgaattgttttcttgatgatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23939788 |
ctagtttggttgtggttttgcttaactttctgttgtttttgaacgttattgctactcccatactgaccgcctttccgtgaattgttttcttgatgatact |
23939689 |
T |
|
| Q |
101 |
gaagatcatcatcaacagaataaaatacttggtcacgggggatagacatggctcttgtttttgccaaaattttaaaccaaaatctaagtattcatcatgg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23939688 |
gatgatcatcatcaacagaataaaatacttggtcacggggtatagacatggctcttgtttttgccaaaattttaaaccaaaatctaagtactcatcatgg |
23939589 |
T |
|
| Q |
201 |
tgacaagaaattagagattgagattgagactcacaataatgagatgtcttcttccaacaataataacaaattttccgacaccaaaaagcattgtaacaga |
300 |
Q |
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| T |
23939588 |
tgacaagaaattagaaattgagattgaggctcacaataatgagatgtcttcttcca---------------------acaccaaaaagcattgtaacaga |
23939510 |
T |
|
| Q |
301 |
gaatgatgctgtggtttatctgttgcctcccttgtgtgcagatgtaagtggttnnnnnnntgttcaataactcacactagttcttctattatatgtgtat |
400 |
Q |
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|||||||| ||||||||||| ||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| |
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| T |
23939509 |
gaatgatgttgtggtttatccgtttcctgccttgtgtgcagatgtaagtggttaaaaaaacgttcaataactcgcactagttcttctattatgtgtgtat |
23939410 |
T |
|
| Q |
401 |
ttctatgattctccacatctacattattttaacagtcaagttatgcttgatggtttactactaaaattttcgtaggcaactgaggttttgatcgagtatc |
500 |
Q |
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| T |
23939409 |
ttctatggttcaaaagctctacattattttaacattcaagttatgcttgatggtttactactaaaattttcgtaggcaactgaggttttgatcgagtatc |
23939310 |
T |
|
| Q |
501 |
gtttcacttcaatcgcaagaataa |
524 |
Q |
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|||||||||||||||||||||||| |
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| T |
23939309 |
gtttcacttcaatcgcaagaataa |
23939286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 465 - 522
Target Start/End: Complemental strand, 24003529 - 24003473
Alignment:
| Q |
465 |
aattttcgtaggcaactgaggttttgatcgagtatcgtttcacttcaatcgcaagaat |
522 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24003529 |
aattttcgtaggcaactgaggttttga-cgagtatcgtttcacttcaatcgcaagaat |
24003473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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