View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10366_high_22 (Length: 309)

Name: NF10366_high_22
Description: NF10366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10366_high_22
NF10366_high_22
[»] chr5 (4 HSPs)
chr5 (91-280)||(38816750-38816932)
chr5 (91-145)||(22013364-22013418)
chr5 (91-145)||(19820449-19820503)
chr5 (90-145)||(42469171-42469226)
[»] chr3 (7 HSPs)
chr3 (48-96)||(10317982-10318030)
chr3 (48-96)||(10335233-10335281)
chr3 (1-34)||(10317918-10317951)
chr3 (1-34)||(10335169-10335202)
chr3 (91-144)||(8587076-8587129)
chr3 (91-136)||(10335341-10335386)
chr3 (90-130)||(24205095-24205135)
[»] chr7 (2 HSPs)
chr7 (91-145)||(27944991-27945045)
chr7 (91-145)||(24105629-24105682)
[»] chr8 (1 HSPs)
chr8 (91-145)||(25192402-25192456)
[»] chr6 (4 HSPs)
chr6 (91-145)||(853914-853968)
chr6 (91-145)||(8365574-8365628)
chr6 (91-130)||(9027143-9027182)
chr6 (91-143)||(12696277-12696328)
[»] chr2 (3 HSPs)
chr2 (91-145)||(33519736-33519790)
chr2 (91-145)||(19536453-19536507)
chr2 (91-145)||(20539729-20539783)
[»] scaffold0306 (1 HSPs)
scaffold0306 (91-146)||(13349-13404)
[»] scaffold0152 (1 HSPs)
scaffold0152 (91-146)||(21923-21978)
[»] chr1 (3 HSPs)
chr1 (91-130)||(40917716-40917755)
chr1 (91-145)||(39130822-39130876)
chr1 (91-132)||(48040517-48040558)
[»] scaffold0223 (1 HSPs)
scaffold0223 (91-145)||(20122-20176)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 91 - 280
Target Start/End: Original strand, 38816750 - 38816932
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatatggttaccgttcaattattctattttctcaaattattgctt 190  Q
    ||||||||||||||||||||||||       |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816750 gtgtcggcgtgtcagtatccgtgc-------ggagtccgtattagtgcttcatagtatatggttaccgttcaattattctattttctcaaattattgctt 38816842  T
Q  191 caattcaagcaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg 280  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816843 caattcaaacaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctgcagcgactctctgttg 38816932  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 22013418 - 22013364
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    |||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  22013418 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 19820449 - 19820503
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    ||||||| |||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  19820449 gtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 42469226 - 42469171
Alignment:
Q  90 cgtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    ||||||||||||||| |||||||| ||||| ||| |||||| | ||||||||||||    
T  42469226 cgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 10317982 - 10318030
Alignment:
Q  48 aatcaaatcatcctacgaagcacgaatactcctccaattaagcgtgtcg 96  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  10317982 aatcaaatcatcctacgaagcacgaacactcctccaattaggcgtgtcg 10318030  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 10335233 - 10335281
Alignment:
Q  48 aatcaaatcatcctacgaagcacgaatactcctccaattaagcgtgtcg 96  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  10335233 aatcaaatcatcctacgaagcacgaacactcctccaattaggcgtgtcg 10335281  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10317918 - 10317951
Alignment:
Q  1 aaattaaggtccaaaactttcatacgctataata 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10317918 aaattaaggtccaaaactttcatacgctataata 10317951  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10335169 - 10335202
Alignment:
Q  1 aaattaaggtccaaaactttcatacgctataata 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10335169 aaattaaggtccaaaactttcatacgctataata 10335202  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 8587076 - 8587129
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 144  Q
    |||||||||||||||| |||||| | ||||||| ||||||||  ||||||||||    
T  8587076 gtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 10335341 - 10335386
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 136  Q
    |||||||||||||||| |||||| ||||||||| |||||| |||||    
T  10335341 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 24205095 - 24205135
Alignment:
Q  90 cgtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 130  Q
    ||||||||||||||||| |||||| ||||||||| ||||||    
T  24205095 cgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 24205135  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 27945045 - 27944991
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    |||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  27945045 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 24105682 - 24105629
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    |||||||||||||||| |||||| |||||||| | ||||||| ||||||||||||    
T  24105682 gtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttcatag 24105629  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 25192402 - 25192456
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    |||||||||||||||| |||||  ||||||||  |||||||||||||||||||||    
T  25192402 gtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 853914 - 853968
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    ||||||||||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  853914 gtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatag 853968  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 8365574 - 8365628
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    |||||||||||||||| |||||| |||||| || |||||||| ||||||||||||    
T  8365574 gtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 9027182 - 9027143
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 130  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  9027182 gtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 12696328 - 12696277
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcat 143  Q
    |||||||||||||||| |||||| ||||||| | |||||||| ||||||||||    
T  12696328 gtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttcat 12696277  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 33519790 - 33519736
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    ||||||| ||||||||||||| | ||||||||| |||||||| ||||||||||||    
T  33519790 gtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 19536453 - 19536507
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  19536453 gtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 20539729 - 20539783
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    |||||| ||||||||| |||||| ||||||| | |||||||| ||||||||||||    
T  20539729 gtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

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Target: scaffold0306 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 13404 - 13349
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 146  Q
    |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  13404 gtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 13349  T

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Target: scaffold0152 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 21923 - 21978
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 146  Q
    |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  21923 gtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 21978  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 40917755 - 40917716
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 130  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  40917755 gtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 40917716  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 39130822 - 39130876
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    ||||| |||||||| ||||| || ||||||||| |||||||| ||||||||||||    
T  39130822 gtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttcatag 39130876  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 48040517 - 48040558
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 132  Q
    |||||||||||||||| |||||| ||||||||| ||||||||    
T  48040517 gtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 20176 - 20122
Alignment:
Q  91 gtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 145  Q
    |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  20176 gtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

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