View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10366_high_3 (Length: 431)
Name: NF10366_high_3
Description: NF10366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10366_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 28 - 416
Target Start/End: Original strand, 17110712 - 17111100
Alignment:
| Q |
28 |
catactgaagtgtgtagttacctggctaattggtgacatatgctattttaaactttaagcaaatagatagaacactttgtacaactttattagatgacgt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110712 |
catactgaagtgtgtagttacctggctaattggtgacatatgctattttaaactttaagcaaatagatagaacactttgtacaactttattagatgacgt |
17110811 |
T |
|
| Q |
128 |
gatttgtttcttgagtttcttaaagaacattgagttttatagcagaattaatttcttgttcaaatctgtcacaataaactattaatttccgcctcatgct |
227 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110812 |
gatttgttttttgagtttctaaaagaacattgagttttatagcagaattaatttcttgttcaaatctgtcacaataaactattaatttccgcctcatgct |
17110911 |
T |
|
| Q |
228 |
gtcaactgtgtgtattattctcttcatgatgtgattatttcagaattagaaggcatgcataagctatttcatattgattgatgaatgctccatttgattt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110912 |
gtcaactgtgtgtattattctcttcatgatgtgattatttcagaattaaaaggcatgcataagctatttcatattgattgatgaatgctccatttgattt |
17111011 |
T |
|
| Q |
328 |
tttcgcaatacaggttagaaggaaatccagtgagactttggtttgcttaaacattacaggaagaactttttgcttattcaagtgttggt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17111012 |
tttcgcaatacaggttagaaggaaatccagtgagagtttggtttgcttaaacattacaggaagaactttttgcttattcaagtgttggt |
17111100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University