View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10366_high_4 (Length: 426)

Name: NF10366_high_4
Description: NF10366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10366_high_4
NF10366_high_4
[»] chr4 (10 HSPs)
chr4 (3-408)||(38978948-38979357)
chr4 (46-125)||(50657015-50657094)
chr4 (117-183)||(38983311-38983377)
chr4 (71-120)||(50657629-50657678)
chr4 (79-125)||(6680286-6680332)
chr4 (371-417)||(18930726-18930772)
chr4 (114-179)||(51288958-51289023)
chr4 (107-183)||(5929191-5929267)
chr4 (133-185)||(33570312-33570364)
chr4 (79-123)||(50709719-50709763)
[»] chr1 (5 HSPs)
chr1 (63-177)||(46097399-46097512)
chr1 (78-147)||(3789281-3789350)
chr1 (79-183)||(11032163-11032267)
chr1 (79-183)||(11426853-11426957)
chr1 (107-183)||(42843885-42843961)
[»] chr2 (9 HSPs)
chr2 (29-149)||(35215241-35215361)
chr2 (46-149)||(35214618-35214721)
chr2 (71-139)||(3148237-3148305)
chr2 (79-126)||(42370894-42370941)
chr2 (78-147)||(26021044-26021113)
chr2 (79-141)||(9371000-9371062)
chr2 (134-183)||(4769051-4769100)
chr2 (107-184)||(44829288-44829365)
chr2 (79-127)||(42369699-42369747)
[»] chr7 (3 HSPs)
chr7 (91-184)||(46252221-46252314)
chr7 (114-184)||(8466517-8466587)
chr7 (114-158)||(46251415-46251459)
[»] chr5 (6 HSPs)
chr5 (82-183)||(6381514-6381615)
chr5 (96-184)||(4929505-4929593)
chr5 (114-185)||(38064140-38064211)
chr5 (136-186)||(6380845-6380895)
chr5 (114-183)||(3135923-3135992)
chr5 (107-175)||(38064873-38064941)
[»] scaffold0181 (1 HSPs)
scaffold0181 (114-183)||(15078-15147)
[»] chr3 (4 HSPs)
chr3 (136-183)||(46187148-46187195)
chr3 (78-147)||(50305656-50305725)
chr3 (73-142)||(51802491-51802560)
chr3 (114-180)||(46993324-46993390)
[»] chr8 (2 HSPs)
chr8 (91-184)||(36734-36827)
chr8 (117-184)||(35939-36006)
[»] chr6 (1 HSPs)
chr6 (104-149)||(2038630-2038675)
[»] scaffold0175 (1 HSPs)
scaffold0175 (143-183)||(26263-26303)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 3 - 408
Target Start/End: Complemental strand, 38979357 - 38978948
Alignment:
Q  3 gccaatgaataaacagggaagaagacg--gtggagggtgagaggtgatggaggagagagaggaatggtaggagatagtgtgttgagtgtctatgataaaa 100  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||    
T  38979357 gccaatgaataaacagggaagaagacacagtggagggtgagaggtgatggaggagagagaagaatggtaggagatagtgtattgaatgtctataataaaa 38979258  T
Q  101 ctatattcttcacttaatctaatggcttaaatcaactttcctatgg--tggaaaagttttccacttttccatgtgaaatgccaccaacttttgatcctag 198  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||    ||| |||||||||||||||||||||||||||| | |||||||||||||||||    
T  38979257 ctatgttcttcacttaatctaatggcttaaaacaacttttctatatattgggaaagttttccacttttccatgtgaaatggcgccaacttttgatcctag 38979158  T
Q  199 tgtaagagataattaaacgaggaatatttattatattgttgcactaaaacaataagataagaatatggatcttgtttattgtattattgtttttcgatgc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  38979157 tgtaagagataattaaacgaggaatatttattatattgttgcagtaaaacaataagataagaatatggatcttgtttattgtattattgtacttcgatgc 38979058  T
Q  299 atagccttttaattgtctatgtctatgaacacgtgtcttgattctttatcggtaacatcacgtgtattgattttttaagaaccgacgtccacgacggctt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  | |||||    
T  38979057 atagccttttaattgtctatgtctatgaacacgtgtcttgattctttatcggtaacatcacgtgtattgattatttaagaaccgacgtctattatggctt 38978958  T
Q  399 ttactctata 408  Q
    ||||||||||    
T  38978957 ttactctata 38978948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 50657094 - 50657015
Alignment:
Q  46 gatggaggagagagaggaatggtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatgg 125  Q
    ||||||||| ||||| || ||||  ||||||||||||||||||| |||||||||||||| | ||||| ||||||| ||||    
T  50657094 gatggaggaaagagaagagtggtgagagatagtgtgttgagtgtttatgataaaactatgtacttcatttaatctgatgg 50657015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 38983311 - 38983377
Alignment:
Q  117 atctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 183  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||   |||||||||||||||| ||||    
T  38983311 atctaatggcttaaaacaacttttctatggtgggaaagttttctcattttccatgtgaaatgtcacc 38983377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 50657629 - 50657678
Alignment:
Q  71 gagatagtgtgttgagtgtctatgataaaactatattcttcacttaatct 120  Q
    |||||||||||||||||||||||||||||| ||| | ||||| |||||||    
T  50657629 gagatagtgtgttgagtgtctatgataaaattatgtacttcatttaatct 50657678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 6680286 - 6680332
Alignment:
Q  79 gtgttgagtgtctatgataaaactatattcttcacttaatctaatgg 125  Q
    ||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  6680286 gtgttgagaatctatgataaaactatgttctttacttaatctaatgg 6680332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 18930772 - 18930726
Alignment:
Q  371 ttttaagaaccgacgtccacgacggcttttactctataagcactgac 417  Q
    |||||||| ||||||||||||||| ||||||||||||  ||||||||    
T  18930772 ttttaagagccgacgtccacgacgacttttactctatcggcactgac 18930726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 51288958 - 51289023
Alignment:
Q  114 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgc 179  Q
    |||||||||||||| |||| || |||  |||||||||||||||||  || |||||||| |||||||    
T  51288958 ttaatctaatggctaaaataaatttttttatggtggaaaagttttatacctttccatgagaaatgc 51289023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 5929267 - 5929191
Alignment:
Q  107 tcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 183  Q
    |||||| |||||||||||| | ||| ||  ||||||||||||| || ||||||  |||| |||||||||||| ||||    
T  5929267 tcttcaattaatctaatggttaaaaacatttttcctatggtgggaaggttttcacctttcccatgtgaaatggcacc 5929191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 33570312 - 33570364
Alignment:
Q  133 caactttcctatggtggaaaagttttccacttttccatgtgaaatgccaccaa 185  Q
    |||||||| |||||||||||||  ||   ||||||||||||||||||||||||    
T  33570312 caactttcttatggtggaaaaggattgaccttttccatgtgaaatgccaccaa 33570364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 50709763 - 50709719
Alignment:
Q  79 gtgttgagtgtctatgataaaactatattcttcacttaatctaat 123  Q
    |||||||||||||||||||||||||| ||||  |||| |||||||    
T  50709763 gtgttgagtgtctatgataaaactatgttctctactttatctaat 50709719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 46097512 - 46097399
Alignment:
Q  63 aatggtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccac 162  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| |    
T  46097512 aatggtaagagatagtgtgttgagtgtctataataaaactatgttcttcatttaatctaatggcttaaa-caactttcctatggtgggaaagttttcccc 46097414  T
Q  163 ttttccatgtgaaat 177  Q
    ||| |||||||||||    
T  46097413 tttcccatgtgaaat 46097399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 3789281 - 3789350
Alignment:
Q  78 tgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggt 147  Q
    ||||||||| || |||||||| | ||| | ||| | |||||||||||||| |||||||||||||||||||    
T  3789281 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggt 3789350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 11032163 - 11032267
Alignment:
Q  79 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatg 178  Q
    |||||||| ||| ||||||| | | | ||| | ||||||||||||||   || |||||||||| ||||||| ||| | |||| |||| |||||| |||||    
T  11032163 gtgttgagagtccatgataagaatgtgttcattacttaatctaatggtcaaattcaactttcccatggtgggaaactattcccctttcccatgttaaatg 11032262  T
Q  179 ccacc 183  Q
    |||||    
T  11032263 ccacc 11032267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 11426957 - 11426853
Alignment:
Q  79 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatg 178  Q
    |||||||  ||||||||||||||| | ||||| | ||||||||||||   |||| | |||||| ||||||| ||| | || | ||||||||||  |||||    
T  11426957 gtgttgatggtctatgataaaactgtgttctttagttaatctaatggtcaaaattagctttcccatggtgggaaactctttcccttttccatgctaaatg 11426858  T
Q  179 ccacc 183  Q
    |||||    
T  11426857 ccacc 11426853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 42843961 - 42843885
Alignment:
Q  107 tcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 183  Q
    |||||| |||||||||||| | ||| ||  ||||||||||||| || ||||||  |||| |||||||||||| ||||    
T  42843961 tcttcaattaatctaatggttaaaagcatttttcctatggtgggaaggttttcacctttcccatgtgaaatggcacc 42843885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 35215241 - 35215361
Alignment:
Q  29 ggtggagggtgagaggtgatggaggagagagaggaatggtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggctt 128  Q
    ||||| || |||| || ||||||||| |||||  | ||||  |||||||||||||||||||||||||||||||||| | ||||| ||||||| |||| |     
T  35215241 ggtggtggatgagtggggatggaggaaagagaatagtggtgagagatagtgtgttgagtgtctatgataaaactatgtacttcatttaatctgatggtta 35215340  T
Q  129 aaatcaactttcctatggtgg 149  Q
    ||| |||||||||||||||||    
T  35215341 aaaacaactttcctatggtgg 35215361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 35214721 - 35214618
Alignment:
Q  46 gatggaggagagagaggaatggtaggagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatg 145  Q
    ||||||||| ||||| || ||||  |||||||||||||||| ||||||||||||||||| | ||||| ||||||| |||| | ||| ||||||||| |||    
T  35214721 gatggaggaaagagaagagtggtgagagatagtgtgttgagcgtctatgataaaactatgtacttcatttaatctgatggttaaaaacaactttcccatg 35214622  T
Q  146 gtgg 149  Q
    ||||    
T  35214621 gtgg 35214618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 3148305 - 3148237
Alignment:
Q  71 gagatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaacttt 139  Q
    ||||||||||||||||||||||| |||||||||| | ||||| ||||||| |||| | ||| |||||||    
T  3148305 gagatagtgtgttgagtgtctataataaaactatgtacttcatttaatctgatggttaaaaacaacttt 3148237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 42370894 - 42370941
Alignment:
Q  79 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggc 126  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  42370894 gtgtcgagtgtctatgataaaactatattctccactttatctaatggc 42370941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 26021113 - 26021044
Alignment:
Q  78 tgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggt 147  Q
    ||||||||| || |||||||| | ||| | ||| | |||||||||||||| |||||||||||||||||||    
T  26021113 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggt 26021044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 9371062 - 9371000
Alignment:
Q  79 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcc 141  Q
    |||||||| || |||||||||| ||| ||||||| |||||||||||||| ||||  |||||||    
T  9371062 gtgttgagagtgtatgataaaagtatgttcttcatttaatctaatggctgaaatttactttcc 9371000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 4769051 - 4769100
Alignment:
Q  134 aactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 183  Q
    |||||||||||||||| ||||  |||| ||||||||||| ||||||||||    
T  4769051 aactttcctatggtgggaaaggattccccttttccatgttaaatgccacc 4769100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 44829288 - 44829365
Alignment:
Q  107 tcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 184  Q
    |||||| || |||||||| || || | |||||||||||||||||||||  |||  | || ||||||||||||||||||    
T  44829288 tcttcaattgatctaatgactaaagtgaactttcctatggtggaaaaggattcaccattcccatgtgaaatgccacca 44829365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 42369747 - 42369699
Alignment:
Q  79 gtgttgagtgtctatgataaaactatattcttcacttaatctaatggct 127  Q
    |||||||||||||||||||||| ||| ||||  |||| |||||||||||    
T  42369747 gtgttgagtgtctatgataaaattatgttctctactttatctaatggct 42369699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 46252221 - 46252314
Alignment:
Q  91 tatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 184  Q
    |||||||||| ||| || |||| |||||  ||||||| |||||||||||||||||||| ||||||||||| |||| | || |||||||||||||    
T  46252221 tatgataaaattatgttattcaattaattcaatggctaaaatcaactttcctatggtgaaaaagttttcccctttcctatctgaaatgccacca 46252314  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 8466517 - 8466587
Alignment:
Q  114 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 184  Q
    |||||||||||| | |||  |||||||| |||||||||||||||||  | || ||||||||||||||||||    
T  8466517 ttaatctaatggttaaaagtaactttcccatggtggaaaagttttcacccttcccatgtgaaatgccacca 8466587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 46251459 - 46251415
Alignment:
Q  114 ttaatctaatggcttaaatcaactttcctatggtggaaaagtttt 158  Q
    |||||||||||||| ||||||||||||| ||||||| ||||||||    
T  46251459 ttaatctaatggctaaaatcaactttcccatggtgggaaagtttt 46251415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 6381514 - 6381615
Alignment:
Q  82 ttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgcca 181  Q
    ||||| ||||||||||| || || |||||  ||||||||| ||| | ||||  ||||||||||||||||||||||||   |||| |||||||||||||||    
T  6381514 ttgagagtctatgataagacaatgttctttgcttaatctagtggttaaaattgactttcctatggtggaaaagttttatcctttcccatgtgaaatgcca 6381613  T
Q  182 cc 183  Q
    ||    
T  6381614 cc 6381615  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 4929505 - 4929593
Alignment:
Q  96 taaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 184  Q
    ||||| ||||||||||||||||||||||   | ||  ||||||||| ||||||||||||  ||   |||| ||||||||||||||||||    
T  4929505 taaaaatatattcttcacttaatctaatcattgaatccaactttcccatggtggaaaaggattaacctttcccatgtgaaatgccacca 4929593  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 38064211 - 38064140
Alignment:
Q  114 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccaccaa 185  Q
    |||||||||||| | |||  |||||||| ||||||| |||||||||  | || |||||||||||||||||||    
T  38064211 ttaatctaatggttaaaagtaactttcccatggtgggaaagttttcacccttcccatgtgaaatgccaccaa 38064140  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 6380895 - 6380845
Alignment:
Q  136 ctttcctatggtggaaaagttttccacttttccatgtgaaatgccaccaac 186  Q
    |||||||||| |||  ||||||| |||||| ||||||||||||||||||||    
T  6380895 ctttcctatgatggggaagttttacactttcccatgtgaaatgccaccaac 6380845  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 3135992 - 3135923
Alignment:
Q  114 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 183  Q
    |||||||| ||||| |||| |||||||| ||||||| || |||||  || || |||||||||||||||||    
T  3135992 ttaatctagtggctaaaataaactttcccatggtgggaaggttttataccttcccatgtgaaatgccacc 3135923  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 38064873 - 38064941
Alignment:
Q  107 tcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaa 175  Q
    |||||| |||||||||||||| |||| ||  |||| ||| |||||||||||||  |||| |||||||||    
T  38064873 tcttcaattaatctaatggctaaaatgaatcttcccatgatggaaaagttttcacctttcccatgtgaa 38064941  T

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Target: scaffold0181 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 15147 - 15078
Alignment:
Q  114 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 183  Q
    |||||| ||||||| ||||||||| ||||||||||| |||||||| | |||| |||||| ||||||||||    
T  15147 ttaatcaaatggctaaaatcaactgtcctatggtgggaaagttttaccctttcccatgttaaatgccacc 15078  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 46187195 - 46187148
Alignment:
Q  136 ctttcctatggtggaaaagttttccacttttccatgtgaaatgccacc 183  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||    
T  46187195 ctttcctatggtgggaaagttttacactttcccatgtgaaatgccacc 46187148  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 50305725 - 50305656
Alignment:
Q  78 tgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggt 147  Q
    ||||||||| || |||||||| | ||| | ||| | |||||||||||||| |||||||||||||||||||    
T  50305725 tgtgttgagagtgtatgataatagtatgtacttgatttaatctaatggctaaaatcaactttcctatggt 50305656  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 51802491 - 51802560
Alignment:
Q  73 gatagtgtgttgagtgtctatgataaaactatattcttcacttaatctaatggcttaaatcaactttcct 142  Q
    ||||||||||||||||||| |||||||||||| | ||||| ||||||| |||| | |||  |||||||||    
T  51802491 gatagtgtgttgagtgtctgtgataaaactatgtacttcatttaatcttatggttaaaaataactttcct 51802560  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 46993390 - 46993324
Alignment:
Q  114 ttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgcc 180  Q
    |||||||||||||| || | |||||| | ||||||| |||||||| |||||| |||||| |||||||    
T  46993390 ttaatctaatggctaaagtgaacttttccatggtgggaaagttttacactttcccatgttaaatgcc 46993324  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 36734 - 36827
Alignment:
Q  91 tatgataaaactatattcttcacttaatctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 184  Q
    |||||||||| | | || |||| |||||| ||||||| ||||||  ||||||||||||| |||||||||   ||  ||||||||||||||||||    
T  36734 tatgataaaattgtgttattcaattaatccaatggctaaaatcatttttcctatggtgggaaagttttcacattccccatgtgaaatgccacca 36827  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 36006 - 35939
Alignment:
Q  117 atctaatggcttaaatcaactttcctatggtggaaaagttttccacttttccatgtgaaatgccacca 184  Q
    ||||||||||| ||||||| ||||| || |||||||||||||   |||| |||||||||||| |||||    
T  36006 atctaatggctaaaatcaaatttcccatagtggaaaagttttgtcctttcccatgtgaaatgtcacca 35939  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 2038675 - 2038630
Alignment:
Q  104 tattcttcacttaatctaatggcttaaatcaactttcctatggtgg 149  Q
    ||||||||| ||||||||||||||||| | |||||||| |||||||    
T  2038675 tattcttcaattaatctaatggcttaagttaactttcccatggtgg 2038630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 26303 - 26263
Alignment:
Q  143 atggtggaaaagttttccacttttccatgtgaaatgccacc 183  Q
    |||||||||||||||| |||||| |||||| ||||||||||    
T  26303 atggtggaaaagttttacactttcccatgttaaatgccacc 26263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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