View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10366_high_8 (Length: 363)
Name: NF10366_high_8
Description: NF10366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10366_high_8 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 4388 - 4201
Alignment:
| Q |
1 |
tacttaacctactacctggtcagttatctctttcaccatccgacaattgagtcaacatgtctccaaacctcaaccaacaagttcattcactaccaggccg |
100 |
Q |
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| T |
4388 |
tacttaacctactacctggtcagttatctctttcaccatccgacaattgagtcaacatgtctccaaacctcaaccaacaagttcattcactaccaggcca |
4289 |
T |
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| Q |
101 |
ccatcagaagattacagnnnnnnngtgtttgaagatttctgcattacttttgacaaacccgcctccatctacttagctcacaatccca |
188 |
Q |
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| T |
4288 |
ccatcagaagattacagtttttttctgtttgaagatttctgcattacttttgacaaacccgcctccatctacttagctcacaatccca |
4201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 183 - 322
Target Start/End: Original strand, 30831945 - 30832084
Alignment:
| Q |
183 |
atcccaatatttgaaagaaatgttcaggaaacctggtactgacaattcagaatttgtagagtttcagaaaaggatcgaacacaaacacgaagaggacgcc |
282 |
Q |
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| T |
30831945 |
atcccaatatttgaaagaaatgttcaggaaatctggtactgacaattcagaatttgcggagtttcagaaaaggatcgaacacaaatacgaagaggacgcc |
30832044 |
T |
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| Q |
283 |
aaagacgaggctgaaataagacttagaaaaatagaagaag |
322 |
Q |
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| T |
30832045 |
aaagacgaggctgaaataagacttagaaaaatagaagaag |
30832084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 19152617 - 19152531
Alignment:
| Q |
243 |
gtttcagaaaaggatcgaacacaaacacgaagaggacgccaaagacgaggctgaaataagacttagaaaaatagaagaagactggga |
329 |
Q |
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| T |
19152617 |
gtttcaggaaaggctcgaacacaaatacgaagaggacgccaaagacgacgctgaaataagacgtctaaaaatagaagaagactggga |
19152531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 183 - 329
Target Start/End: Complemental strand, 11299361 - 11299215
Alignment:
| Q |
183 |
atcccaatatttgaaagaaatgttcaggaaacctggtactgacaattcagaatttgtagagtttcagaaaaggatcgaacacaaacacgaagaggacgcc |
282 |
Q |
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| T |
11299361 |
atcccaatatttgaaagaaatgttcagaaaacctggtactgacaattcagaatttgtggagtttcagttaaggttcgaacacaaatacgaagaggacgtc |
11299262 |
T |
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| Q |
283 |
aaagacgaggctgaaataagacttagaaaaatagaagaagactggga |
329 |
Q |
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| T |
11299261 |
aaagacgatgctgaaataagacttttaaaaatagaagaagactggga |
11299215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 183 - 329
Target Start/End: Original strand, 6924519 - 6924665
Alignment:
| Q |
183 |
atcccaatatttgaaagaaatgttcaggaaacctggtactgacaattcagaatttgtagagtttcagaaaaggatcgaacacaaacacgaagaggacgcc |
282 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
6924519 |
atcccaaattttcaaagaaatgttcaggaaacctggtactgacaattcagaatttgtggagtttcaggaaaggctcgaacacaaatacgaagaggacgcc |
6924618 |
T |
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| Q |
283 |
aaagacgaggctgaaataagacttagaaaaatagaagaagactggga |
329 |
Q |
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| T |
6924619 |
aaagacgacgctgaaataagacgtctaaaaatagaagaagactggga |
6924665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 183 - 329
Target Start/End: Original strand, 499771 - 499917
Alignment:
| Q |
183 |
atcccaatatttgaaagaaatgttcaggaaacctggtactgacaattcagaatttgtagagtttcagaaaaggatcgaacacaaacacgaagaggacgcc |
282 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
499771 |
atcccaaattttcaaagaaatgttcaggaaacctggtactgacaattcagaatttgtggagtttcaggaaaggctcgaacacaaatacgaagaggacgcc |
499870 |
T |
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| Q |
283 |
aaagacgaggctgaaataagacttagaaaaatagaagaagactggga |
329 |
Q |
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| T |
499871 |
aaagacgacgctgaaataagacgtctaaaaatagaagaagactggga |
499917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 21408352 - 21408301
Alignment:
| Q |
236 |
ttgtagagtttcagaaaaggatcgaacacaaacacgaagaggacgccaaaga |
287 |
Q |
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|||| |||||||||||||| ||| |||||||| | ||||||||||||||||| |
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| T |
21408352 |
ttgtggagtttcagaaaagaatcaaacacaaatatgaagaggacgccaaaga |
21408301 |
T |
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