View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10367_high_10 (Length: 338)
Name: NF10367_high_10
Description: NF10367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10367_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 23173891 - 23174190
Alignment:
| Q |
2 |
ttcgcgacgcgaaggagagcaagttctgctttcagatccttcaattgattcagaagatcttgttttgttttttgtctcagctcatataccttgactccag |
101 |
Q |
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| T |
23173891 |
ttcgcgacgcgaaggagagcaagttcggctttcagatccttcaattgattcagaagatcttgttttgttttttgtctcagctcatataccttgactccag |
23173990 |
T |
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| Q |
102 |
ctattgcattcaaaaaagaagaagaaaggattcagattcagttaaattgaatacaaaaaatgatgctagaatcaaattgagagaataaaggattggtttg |
201 |
Q |
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| T |
23173991 |
ctattgcattcaaaaaaga---agaaaggattcagattcagttaaattgaatacaaaaaatgatgctagaatcaaattgagagaataaaggattggtttg |
23174087 |
T |
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| Q |
202 |
ttcttacccatttcgaaggtcttgaatcgccgcgagaaaacttggtagaatgtggaagctttgttatggtttctacacaaaaccctaaactgagagaaaa |
301 |
Q |
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| T |
23174088 |
ttcttacccatttcgaaggtcttgaatcgccgcgagaaaacttggtagaatgtggaagctttgttatggtttctacacaaaaccctaaactgagagaaaa |
23174187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27454733 - 27454646
Alignment:
| Q |
1 |
tttcgcgacgcgaaggagagcaagttctgctttcagatccttcaattgattcagaagatcttgttttgttttttgtctcagctcatat |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
27454733 |
tttcgcgacgcgaaggagagcaagttctgctttcagatccttcaattgattcagaagatctggttttgttttttgcctcagctcatat |
27454646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 27454587 - 27454533
Alignment:
| Q |
180 |
gagagaataaaggattggtttgttcttacccatttcgaaggtcttgaatcgccgc |
234 |
Q |
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| T |
27454587 |
gagagaataaaggattggtttgttcttacccatttcgaaggtcttgaatcgccgc |
27454533 |
T |
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