View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10367_high_14 (Length: 320)
Name: NF10367_high_14
Description: NF10367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10367_high_14 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 2062542 - 2062832
Alignment:
| Q |
30 |
cttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagcaagcaatc |
129 |
Q |
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| T |
2062542 |
cttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaaaaaatagttctgctgagtatcgcgctttaattttgggtctaaagcaagcaatc |
2062641 |
T |
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| Q |
130 |
tataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtttctacattaacaagaaaat |
229 |
Q |
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| T |
2062642 |
tataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtttctacattaacaagaaaat |
2062741 |
T |
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| Q |
230 |
gaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaatttatcgagcttgtg |
320 |
Q |
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| T |
2062742 |
gaaatttacaattttcttataacatgttattggttttgcaacagtttttgggttcatggaaaatcagcaacccgaatttattgagcttgtg |
2062832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 2058116 - 2058402
Alignment:
| Q |
30 |
cttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagcaagcaatc |
129 |
Q |
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| T |
2058116 |
cttttcttcacagctctatcgattccgtgaaggactgggcgatcagacagatagttctgctgagtatcgcgctttaattttgggactaaagcaagcaatc |
2058215 |
T |
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| Q |
130 |
tataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtttctacattaacaagaaaat |
229 |
Q |
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| T |
2058216 |
tataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggtttgtgttctat----tatggtttttgcattaacaagaaaat |
2058311 |
T |
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| Q |
230 |
gaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaatttatcgagcttgtg |
320 |
Q |
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| T |
2058312 |
gaaatttacaattttcttataatatgttattggttttgcaacagtttttgggttcatggaaaatcatgaaccctaatttattgagcttgtg |
2058402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 2047444 - 2047606
Alignment:
| Q |
30 |
cttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagcaagcaatc |
129 |
Q |
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|||||||| ||||||| |||||| ||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
2047444 |
cttttctttacagctctatcgattccgtgaaggactgggctatcaaacaaataacgctgctgagtatcgtgctttaattttgggacttaatcaagcaatc |
2047543 |
T |
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| Q |
130 |
tataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgt |
192 |
Q |
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| T |
2047544 |
tataaaggatataggaacatcagtgtgcatggagactccttgcttgttgtcaatcaggtttgt |
2047606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 2054005 - 2054179
Alignment:
| Q |
30 |
cttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagcaagcaatc |
129 |
Q |
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| T |
2054005 |
cttttcttcgcagctctatcgattccgtgaaggactgggctatcaaacaaataacgttgctgagtaccgcgctttgatattgggactgaaacaagctatc |
2054104 |
T |
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| Q |
130 |
tataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatat |
204 |
Q |
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| T |
2054105 |
aataaaggatttaagaacatcagtgtgcaaggagactccaaccttgttatcaatcaggtttgtgttctattatat |
2054179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 2054339 - 2054414
Alignment:
| Q |
226 |
aaatgaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaacc |
301 |
Q |
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| T |
2054339 |
aaatgaaatttacaattttcttatcatatgttattggttttgcaacagtttctgggttcatggaaaatcaacaacc |
2054414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 2048106 - 2048172
Alignment:
| Q |
236 |
tacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccc |
302 |
Q |
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| T |
2048106 |
tacattttttgtatcacttgttattggttttgcaacagtttctgggtatatggaaaatcaacaaccc |
2048172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 2088570 - 2088606
Alignment:
| Q |
251 |
atatgttattggttttgcaacagtttttgggttcatg |
287 |
Q |
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| T |
2088570 |
atatgttattggttttgcaacagtttaagggttcatg |
2088606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 39183084 - 39183031
Alignment:
| Q |
256 |
ttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaattta |
309 |
Q |
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| T |
39183084 |
ttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaattta |
39183031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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