View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10367_high_17 (Length: 314)
Name: NF10367_high_17
Description: NF10367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10367_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 2264532 - 2264320
Alignment:
| Q |
34 |
aatgcaaaagcttagttttaaaacttctcaaaactgcgataatatttgtatagaaacgcaataatttgtactgtggatgctcaaccaaacacaccattaa |
133 |
Q |
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| T |
2264532 |
aatgcaaaagcttagttttaaaacttctcaaaactgcgacaatatttgtatagaaatgcaataatttgtactgagaatgctcaaccaaacacaccattaa |
2264433 |
T |
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| Q |
134 |
tctttt-cnnnnnnngaaaatgttaaatcaatatatacatcaacatttgggactacttgaattggaatttcattatggcgtgtatggctagtttatgtac |
232 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2264432 |
tctttttcaaaaaaagaaaatgttaaatcaatatatacatcaacatttgggactacttgaattggaatttcattatggcgtgtatagctagtttatgtac |
2264333 |
T |
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| Q |
233 |
agagagttataca |
245 |
Q |
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||||||||||||| |
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| T |
2264332 |
agagagttataca |
2264320 |
T |
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