View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10367_high_18 (Length: 314)

Name: NF10367_high_18
Description: NF10367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10367_high_18
NF10367_high_18
[»] chr2 (1 HSPs)
chr2 (24-314)||(23368808-23369098)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 24 - 314
Target Start/End: Complemental strand, 23369098 - 23368808
Alignment:
Q  24 catcatcatatatagctactttcaaggcatccaaattgcaattttcttgattaacccctgttaggcagtgtattaatttaactattatttgtgtaatata 123  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||    
T  23369098 catcatcatatatatctactttgaaggcatccaaattacaattttcttaattaacacatgttaggcaatgtattaatttaactattatttgtgtaatata 23368999  T
Q  124 gaaagttgaatattcaacaattaccattggctgatgagtttgatgatggaccaccttcttcaaatactgaatcaaaattaagtcttgtaataggaagctc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23368998 gaaagttgaatattcaacaattaccattggctgatgagtttgatgatggaccaccttcttcaaataatgaatcaaaattaagtcttgtaataggaagctc 23368899  T
Q  224 tttaaatctccttctcttttgaactctagttttttgtccctttttggttgtatttagaacttgcggcactacatattgcatcaatgtatgt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  23368898 tttaaatctccttctcttttgaactctagttttttgtccctttttggttgtatttagaactagcggcactacatattgcatcagtgtatgt 23368808  T

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