View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10367_high_19 (Length: 310)
Name: NF10367_high_19
Description: NF10367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10367_high_19 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 29404860 - 29405152
Alignment:
| Q |
18 |
tggacatcatcaattcccattccaacgtcagacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaattcagttcgagtcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29404860 |
tggacatcatcaattcccattccaacatccgacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaactcagttcgagtcc |
29404959 |
T |
|
| Q |
118 |
aaactcattacgactcagacatgtcaacacaccaagtagatgacctcgatccatcagatgaatccaatgctccagctagcaggccaaaattcactcgtgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29404960 |
aaactcattacgactcagacatgtcaacacaccaagtagatgagctcgatccatcagatgaatccaatgctccagctagcaggccaaaattcactcgtgg |
29405059 |
T |
|
| Q |
218 |
gagctcaactcggttcacggcagattcccctgagaattctggcggaggaaatctacgaccacaactatcacgcaagaattccaccaacgtgtc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29405060 |
gagctcaactcggttcacggcagattcctctgagaattctggcggaggaaatctacgaccacaactatcacgcaagaattccaccaacgtgtc |
29405152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 19911952 - 19911822
Alignment:
| Q |
18 |
tggacatcatcaattcccattccaacgtcagacatccctatccaaaatccaaacagcagaagcttttcacaattcggtcgtcgcaattcagttcgagtcc |
117 |
Q |
| |
|
||||||||| | |||| |||||||| ||||| || |||||||||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||| ||| |
|
|
| T |
19911952 |
tggacatcaacgattcatattccaacttcagatattcctatccaaaatcctaatagtagaagtttttctcaattcggtcgtcgcaactcagtccgaatcc |
19911853 |
T |
|
| Q |
118 |
aaactcattac---gactcagacatgtcaac |
145 |
Q |
| |
|
||||||| || ||||||||||||||||| |
|
|
| T |
19911852 |
aaactcaccacgatgactcagacatgtcaac |
19911822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University