View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10367_high_20 (Length: 305)

Name: NF10367_high_20
Description: NF10367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10367_high_20
NF10367_high_20
[»] chr8 (7 HSPs)
chr8 (31-171)||(27489090-27489230)
chr8 (31-168)||(27485632-27485769)
chr8 (50-129)||(27458055-27458134)
chr8 (35-105)||(27456309-27456379)
chr8 (35-118)||(27483182-27483265)
chr8 (31-119)||(27480234-27480320)
chr8 (205-235)||(27489038-27489068)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 27489230 - 27489090
Alignment:
Q  31 gctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttgttaacacctct 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27489230 gctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttgttaacacctct 27489131  T
Q  131 caacacatttatactattactccctccgttcctcatcacaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27489130 caacacatttatactattactccctccgttcctcatcacaa 27489090  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 27485769 - 27485632
Alignment:
Q  31 gctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttgttaacacctct 130  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| || |||||| | |||| ||||    
T  27485769 gctccacactcacagagttaaggttgttttgagagctgttgcccctctgtgttgctgtggtagccgatgactcgtctcagtcaaatttataaacagctct 27485670  T
Q  131 caacacatttatactattactccctccgttcctcatca 168  Q
    |||||||| |||||||||||| |||| |||||||||||    
T  27485669 caacacatatatactattacttcctctgttcctcatca 27485632  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 27458134 - 27458055
Alignment:
Q  50 aaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttgttaacacctc 129  Q
    |||||| ||||||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||||| ||||||||||    
T  27458134 aaggtttttttgagagttgttgcctctctgtgttattatggtagccaatgattcgtctcggagaaattttttaacacctc 27458055  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 27456379 - 27456309
Alignment:
Q  35 cacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgt 105  Q
    ||||| ||||||||||||||||||||||||| |||| || |||| |||||| |||||||||||||||||||    
T  27456379 cacacccagagagttaaggttgttttgagagttgtttcccctctttgttgtcgtggtagccgatgattcgt 27456309  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 27483265 - 27483182
Alignment:
Q  35 cacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaattt 118  Q
    |||| |||||||  ||||||||||||||||| |||||||| || |||||| |||||| ||||||||| |||||| |||||||||    
T  27483265 cacagtcagagaaataaggttgttttgagagttgttgcctttccgtgttgctgtggttgccgatgatccgtctcagtgaaattt 27483182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 27480320 - 27480234
Alignment:
Q  31 gctccacactcagagagttaaggttgttttgagagctgttgcctctctgtgttgttgtggtagccgatgattcgtctcggtgaaatttg 119  Q
    ||||||||||||||||  ||||||||| ||||| | ||||||| ||||| |||| ||||  |||||||||| | |||||||||| ||||    
T  27480320 gctccacactcagaga--taaggttgtcttgagtgttgttgccgctctgagttgctgtgcaagccgatgatccttctcggtgaactttg 27480234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 235
Target Start/End: Complemental strand, 27489068 - 27489038
Alignment:
Q  205 taataaacaacaatggaaatggaatgaataa 235  Q
    |||||||||||||||||||||||||||||||    
T  27489068 taataaacaacaatggaaatggaatgaataa 27489038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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