View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10367_high_9 (Length: 341)
Name: NF10367_high_9
Description: NF10367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10367_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 171 - 316
Target Start/End: Original strand, 2335724 - 2335869
Alignment:
| Q |
171 |
aaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaatttttccatgttcacacaagacttttatatctaatttcgtcaaaca |
270 |
Q |
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| T |
2335724 |
aaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaatttttccatcttcacactagacttttatatctaatttcgtcaaaca |
2335823 |
T |
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| Q |
271 |
tgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat |
316 |
Q |
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| T |
2335824 |
tgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat |
2335869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 166 - 316
Target Start/End: Original strand, 2319322 - 2319473
Alignment:
| Q |
166 |
ccttcaaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaat-ttttccatgttcacacaagacttttatatctaatttcgt |
264 |
Q |
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|||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || | |
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| T |
2319322 |
ccttcaaagaatgatgcaaaggagaaaaacttgtctccttcataaatgatgctattaaatattttccatgttcacacaagacttttatatctaatgtcat |
2319421 |
T |
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| Q |
265 |
caaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat |
316 |
Q |
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| T |
2319422 |
gatacatgtgtagtactatcaatgagtctaatcattcaatcgtaccgaatat |
2319473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 147 - 316
Target Start/End: Original strand, 2326134 - 2326305
Alignment:
| Q |
147 |
aaaattgttgtcatgtctaccttcaaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaa--tttttccatgttcacacaag |
244 |
Q |
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| T |
2326134 |
aaaattgttgtcatttcc-ctttcaaagaatgatgcataggagaaatacatgtatccttcgtaaatgatgcttttacatttttttctatgttcacataag |
2326232 |
T |
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| Q |
245 |
acttttatatct-aatttcgtcaaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat |
316 |
Q |
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| T |
2326233 |
acttttatttctaaatgtcgtgacacatgtgtagcaccatcaattagtctaatcattatatcgtacagaatat |
2326305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 2335664 - 2335723
Alignment:
| Q |
62 |
atgtaagtttggccatagcgtgtggaaagaatcttacttcttttggtccagcatgtacca |
121 |
Q |
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| T |
2335664 |
atgtaagtttggcaatagcgtgtggaaagaatcttacttcttttggtccagcatgtacca |
2335723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 39253190 - 39253125
Alignment:
| Q |
2 |
cactacccattaccaacaaaattgatgcagcattcatgctactgtacagaataagatttcatgtaa |
67 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39253190 |
cactactcattaccaacaaaattgatgcaacattcatgctactgtacagaataagatttcatgtaa |
39253125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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