View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10368_high_2 (Length: 229)
Name: NF10368_high_2
Description: NF10368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10368_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 43294271 - 43294480
Alignment:
| Q |
10 |
taaacttaacacctatgtcatgtctctgagatgttatcattttggtttggttcctttgattaaaattttttgttgattgatgagagttattcccacaata |
109 |
Q |
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| T |
43294271 |
taaacttaacacctatgtcatgtctctgagatgttatcattttggtttggttcctttgattaaatttttttgttgattgatgagagttattcccacaata |
43294370 |
T |
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| Q |
110 |
taaacttaacacctatattcttatccttactactcactcactagtcactataactcaagtataagttgcatgcgagttgcgacactaggcaagtaatgat |
209 |
Q |
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| T |
43294371 |
taaacttaacacctatattcttatccttact----actcactagtcactataactcaagtataagttgcatgcgagttgcgacactaggcaagtaatgat |
43294466 |
T |
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| Q |
210 |
ttgatacgaagaat |
223 |
Q |
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|||||||||||||| |
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| T |
43294467 |
ttgatacgaagaat |
43294480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 44026690 - 44026472
Alignment:
| Q |
10 |
taaacttaacacctatgtcatgtctctgagatgttatcattttggtttggttcctttgattaaaat---------tttttgttgattgatgagagttatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44026690 |
taaacttaacacctatgtcatgtctctgagatgttatcattttggtttggttcctttgattaaaatcaatttttttttttgttgattgatgagagttatt |
44026591 |
T |
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| Q |
101 |
cccacaatataaacttaacacctatattcttatccttactactcactcactagtcactataactcaagtataagttgcatgcgagttgcgacactaggca |
200 |
Q |
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| T |
44026590 |
cccacaatataaacttaacacctatattcttatccttactactcact----agtcactataactcaagtataagttgcatgcgagttgcgacactaggca |
44026495 |
T |
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| Q |
201 |
agtaatgatttgatacgaagaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
44026494 |
agtaatgatttgatacgaagaat |
44026472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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