View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10368_low_1 (Length: 400)
Name: NF10368_low_1
Description: NF10368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10368_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 79 - 271
Target Start/End: Original strand, 43188281 - 43188473
Alignment:
| Q |
79 |
caccagcactcctttactgttatagtcggtctttgtgtcacatcacggccaacctttgcgtacatgaacacacaaaacatattggtgtcaattgtcacat |
178 |
Q |
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| T |
43188281 |
caccagcactcctttactgtgatagtcggtctttgtgtcacatcacggccaacctttgcgtacatgaacgcacaaaacatattggtgtcaattgtcacat |
43188380 |
T |
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| Q |
179 |
cattcgcgagaagcttcaagtaaagttgttttgcctacttcatcatatacaatcaatgaactcaattcattctatttatcattttctctttac |
271 |
Q |
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| T |
43188381 |
cattcgcgagaagcttcaagtaaagttgttttgcctacttcatcatatacaatcaatgaactcaattcattctatttatcattttctctttac |
43188473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 281 - 385
Target Start/End: Original strand, 43188512 - 43188616
Alignment:
| Q |
281 |
agcgagtaatccatagtaaacaatgtaccaaagtgatccacgtacaattttcccactttaggaggattttatagtttgtggtccatctgttcttcctgtt |
380 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
43188512 |
agcgagtaatccatagtaaacaatgtaccaaagtaatccgcgtacaattttcccactttaggaggattttatagtttgtggttcatctattcttcctgtt |
43188611 |
T |
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| Q |
381 |
gttca |
385 |
Q |
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| T |
43188612 |
gttca |
43188616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 43182335 - 43182382
Alignment:
| Q |
220 |
atcatatacaatcaatgaactcaattcattctatttatcattttctct |
267 |
Q |
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| T |
43182335 |
atcatttacaatcaatgaactcaattcattctattcatcattttctct |
43182382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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