View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10368_low_4 (Length: 228)
Name: NF10368_low_4
Description: NF10368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10368_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44027177 - 44026953
Alignment:
| Q |
1 |
ttgttataaagtgatataaaagagcgttgagtaacatacaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027177 |
ttgttataaagtgatataaaagagcgttgagtaacatagaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattt |
44027078 |
T |
|
| Q |
101 |
taagatttgcaaatcattcaattaagtgaagttgaatgctgacagagttgtttaagaacgcattaaattgtcaaagctgaagatagggaa---caccctc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
44027077 |
taagatttgcaaatcattcaattaagtgaagttgaatgctgacagagttgtttaagaaagcattaaattgtcaaagctgaagatagggaactgcaccctc |
44026978 |
T |
|
| Q |
198 |
gttaactaaaccatctacattagat |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
44026977 |
attaactaaaccatctacattagat |
44026953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43293784 - 43294008
Alignment:
| Q |
1 |
ttgttataaagtgatataaaagagcgttgagtaacatacaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43293784 |
ttgttataaagtgatataaaagagcgttgagtaacatagaagggagacaagacaattaattatttgttggtcttaggtgaataggttttaatttttattt |
43293883 |
T |
|
| Q |
101 |
taagatttgcaaatcattcaattaagtgaagttgaatgctgacagagttgtttaagaacgcattaaattgtcaaagctgaagatagggaa---caccctc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
43293884 |
taagatttgcaaatcattcaattaagtgaagttgaatgctgacagagttgtttaagaaagcattaaattgtcaaagctgaagatagggaactgcaccctc |
43293983 |
T |
|
| Q |
198 |
gttaactaaaccatctacattagat |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
43293984 |
attaactaaaccatctacattagat |
43294008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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