View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10369_low_3 (Length: 275)
Name: NF10369_low_3
Description: NF10369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10369_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 35766102 - 35766352
Alignment:
| Q |
19 |
gcacgtttatcaacagaagcccaataccgttcccaggagtttgtttcatcattttcaagttggttcaattcccatccatgagaagcataatttggctcag |
118 |
Q |
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| T |
35766102 |
gcacgtttatcaacagaagcccaataacgttcccaggagtttgtttcatcattttcatgttggttcaattcccatccttgagaagcataatttggttcag |
35766201 |
T |
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| Q |
119 |
gaggctttgttacttgttctttttcttcttcatccccccatccagtaggtatgattccaagatcggcaaaggacttcttctctaggagagaattatcgat |
218 |
Q |
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| T |
35766202 |
aaggttttcttacctcatctttttcctcttcgtccccccatccagtaggtacgattccaagatcggcaaaggacttcttcactaggagagaattatcgat |
35766301 |
T |
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| Q |
219 |
aattagagtcacgtcgcgtttttcttccatgttgtcactggcctatgcttc |
269 |
Q |
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| T |
35766302 |
aattagagtcacgtcgcgtttttcttccatgttgtcactggcctctgcttc |
35766352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 168
Target Start/End: Original strand, 35760632 - 35760768
Alignment:
| Q |
29 |
caacagaagcccaataccgttcccaggagtttgtttcatcattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgt |
128 |
Q |
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| T |
35760632 |
caacaggagcacgatactgttcccaagagtttgtttcattattttcatgttggttcgattcccatccctgagcagcataattcggttcagaaggctttgt |
35760731 |
T |
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| Q |
129 |
tacttgttctttttcttcttcatccccccatccagtaggt |
168 |
Q |
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| T |
35760732 |
tac---ttctttttcttcttcgtccccccatccagtaggt |
35760768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 35755504 - 35755618
Alignment:
| Q |
47 |
gttcccaggagtttgtttcatcattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgttacttgttctttttcttc |
146 |
Q |
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||||||| ||||||||||||| ||||||| |||| || |||||||||| ||| ||||||||||||||||| ||||||| | |||| |||||||||||| |
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| T |
35755504 |
gttcccaagagtttgtttcattattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggctttctaacttcttctttttcttc |
35755603 |
T |
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| Q |
147 |
ttcatccccccatcc |
161 |
Q |
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| T |
35755604 |
ttcgtccccccatcc |
35755618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 35799092 - 35799201
Alignment:
| Q |
56 |
agtttgtttcatcattttcaagttggttcaattcccatccatgagaagcataatttggctcaggaggctttgttacttgttctttttcttcttcatcccc |
155 |
Q |
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| T |
35799092 |
agtttgtttcattattttcatgttggtttgattcgcatcccagagcagcataatttggttcagaaggctttgttaacttttc---gtcttcttcgtcccc |
35799188 |
T |
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| Q |
156 |
ccatccagtaggt |
168 |
Q |
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| T |
35799189 |
ccatccagtaggt |
35799201 |
T |
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