View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10369_low_6 (Length: 240)
Name: NF10369_low_6
Description: NF10369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10369_low_6 |
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| [»] scaffold0044 (2 HSPs) |
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| [»] chr7 (6 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: scaffold0044 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 83501 - 83598
Alignment:
| Q |
143 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaattttttgaaggaagccttaatgatccttatgtttgatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
83501 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaattttttgaaggaagccttaatgatccttatgtttgatatt |
83598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 83373 - 83428
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaatatta |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
83373 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaatatta |
83428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 36828471 - 36828374
Alignment:
| Q |
143 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaattttttgaaggaagccttaatgatccttatgtttgatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36828471 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaattttttgaaggaagccttaatgatccttatgtttgatatt |
36828374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 37617389 - 37617486
Alignment:
| Q |
143 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaattttttgaaggaagccttaatgatccttatgtttgatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37617389 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaattttttgaaggaagccttaatgatccttatgtttgatatt |
37617486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 34500353 - 34500245
Alignment:
| Q |
143 |
acggtaatttcctaactatactctctttttcaaatg--------atttgattgtctttagccttaat---tttttgaaggaagccttaatgatccttatg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| |
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| T |
34500353 |
acggtaatttcctaactatactctctttttcaaatgttcaaatgatttgattgtctttagccttaataatttttttaaggaagccttaatgattcttatg |
34500254 |
T |
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| Q |
232 |
tttgatatt |
240 |
Q |
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||||||||| |
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| T |
34500253 |
tttgatatt |
34500245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 34500481 - 34500426
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaatatta |
79 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34500481 |
tgctgaaaagtcatacaatgaatgtgccagctaattgcttgctattcttaatatta |
34500426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 36828599 - 36828544
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaatatta |
79 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36828599 |
tgctgaaaagtcatacaatgaatgtgccagctaattgcttgctattcttaatatta |
36828544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 37617261 - 37617316
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaatatta |
79 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
37617261 |
tgctgaaaagtcatacaatgaatgtgccagctaatttcttgctattcttaatatta |
37617316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 8114305 - 8114403
Alignment:
| Q |
143 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaa-ttttttgaaggaagccttaatgatccttatgtttgatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8114305 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaatttttttgaaggaagccttaatgatccttatgtttgatatt |
8114403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 8114177 - 8114232
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaatatta |
79 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
8114177 |
tgctgaaaagtcatacaatgaatgtgccagctaattacttgctattcttaatatta |
8114232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 3170831 - 3170786
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctatt |
69 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3170831 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctatt |
3170786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 3170666 - 3170583
Alignment:
| Q |
164 |
tctctttttcaaatgatttgattgtcttt----agccttaat---tttttgaaggaagccttaatgatccttatgtttgatatt |
240 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
3170666 |
tctctttttcaaatgatttgattgtctttctttagccttaataatttttataaggaagccttaatgatccttatgtttgatatt |
3170583 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 3170720 - 3170681
Alignment:
| Q |
143 |
acggtaatttcctaactatactctctttttcaaatgattt |
182 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
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| T |
3170720 |
acggtaatttcctaacgatactctctttttcaaatgattt |
3170681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 44420947 - 44420847
Alignment:
| Q |
143 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagcct---taattttttgaaggaagccttaatgatccttatgtttgatat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
44420947 |
acggtaatttcctaactatactctctttttcaaatgatttgattgtctttagccttaataatttttttaaggaagccttaatgattcttatgtttgatat |
44420848 |
T |
|
| Q |
240 |
t |
240 |
Q |
| |
|
| |
|
|
| T |
44420847 |
t |
44420847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 44421075 - 44421020
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaatatta |
79 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44421075 |
tgctgaaaagtcatacaatgaatgtgccagctaattgcttgctattcttaatatta |
44421020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 44429207 - 44429152
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaatatta |
79 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
44429207 |
tgctgaaaagtcatacaatgaatgtgccatctaattgcttgctattcttaatatta |
44429152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 44429079 - 44429044
Alignment:
| Q |
143 |
acggtaatttcctaactatactctctttttcaaatg |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
44429079 |
acggtaatttcctaactatactctctttttcaaatg |
44429044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 15333465 - 15333417
Alignment:
| Q |
27 |
tgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaat |
75 |
Q |
| |
|
||||| |||| |||||||||||| | ||||||||||||||||||||||| |
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|
| T |
15333465 |
tgaaatgtcacacaatgaatgtgcctgctaattgcttgctattcttaat |
15333417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 28661639 - 28661603
Alignment:
| Q |
39 |
caatgaatgtgtcagctaattgcttgctattcttaat |
75 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
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| T |
28661639 |
caatgaatgtgtccgctaattgcttgctattcttaat |
28661603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 2993905 - 2993854
Alignment:
| Q |
24 |
tgctgaaaagtcatacaatgaatgtgtcagctaattgcttgctattcttaat |
75 |
Q |
| |
|
||||||||||||| |||| ||||||| |||||||||||||||| ||| |||| |
|
|
| T |
2993905 |
tgctgaaaagtcacacaacgaatgtgccagctaattgcttgcttttcctaat |
2993854 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 1061707 - 1061654
Alignment:
| Q |
147 |
taatttcctaactatactctctttttcaaatgatttgattgtctttagccttaat |
201 |
Q |
| |
|
|||||| |||| ||||||||||||||| | |||||||||||| |||||||||||| |
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|
| T |
1061707 |
taatttgctaagtatactctctttttcgattgatttgattgt-tttagccttaat |
1061654 |
T |
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