View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1036_high_7 (Length: 352)
Name: NF1036_high_7
Description: NF1036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1036_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 34161346 - 34160999
Alignment:
| Q |
1 |
attcaccttctgggaagcttcataaacaactcatttcaccgtgcccaatttcgtggagttggctgtagaatctccacaaaataaaaacacataaggaaaa |
100 |
Q |
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| T |
34161346 |
attcaccttctgggaagcttcataaacaactcacttcaccgtgcccaatttcgtggagttggctgtagaatctccacaaaataaaaacacataaggaaag |
34161247 |
T |
|
| Q |
101 |
cacttagaggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaag |
200 |
Q |
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| T |
34161246 |
cacttagaggtaagggtatttccccatactaatcatattagactaatggttaggtattataaagtagaaattgtgattcataatcgtttaaagagagaag |
34161147 |
T |
|
| Q |
201 |
aaatttaactataaatttaattagtaaattatgagtggtgttggaatcctatagaatgctagtcttgttgaggttggggttttggattcttaggggcggt |
300 |
Q |
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| T |
34161146 |
aaatttaactataaatttaattagtaagttatgagtggtgttggaatcctatagaatgctagtcttgttgaggttggggttttggattcttaggggcggt |
34161047 |
T |
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| Q |
301 |
ttaatctctattgtttctgcagtgttagtttaattgtctgtggtgctg |
348 |
Q |
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| T |
34161046 |
ttaatctctattgtttctgcagtgttagtttaattgtctgtggtgctg |
34160999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 152 - 348
Target Start/End: Original strand, 31979504 - 31979700
Alignment:
| Q |
152 |
aggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaatttaactataaatttaattagtaaattatgagtggtgttggaatccta |
251 |
Q |
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| T |
31979504 |
aggtattatagagtagaaattatgattcataatcgtttaaagagagtagaaatttaactataaatttaattagtaaattatgagtggtgttggaatccta |
31979603 |
T |
|
| Q |
252 |
tagaatgctagtcttgttgaggttggggttttggattcttaggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtggtgctg |
348 |
Q |
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| T |
31979604 |
gagaatgctagtcttgttgaggttggggttttggattcttaggggcggtttaatctctattgtttctgcagtgttagtttaattgtctgtggtgctg |
31979700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 108 - 202
Target Start/End: Original strand, 25673134 - 25673228
Alignment:
| Q |
108 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaa |
202 |
Q |
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| T |
25673134 |
aggtaagggcacttcctcatacttatcatattagactaatggttagatattatagagtagaaagtatgattcataaccgtttaaaaagaaaagaa |
25673228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 14490473 - 14490591
Alignment:
| Q |
108 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaattta |
207 |
Q |
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||||||||| | ||| ||||||| ||||||||| |||||||||||| |||| | |||||||| | |||||||||| ||||||||||| |||||||| | |
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| T |
14490473 |
aggtaagggcacttctccatacttatcatattaaactaatggttagatattgtagagtagaaagtatgattcataaccgtttaaagaggaaagaaattga |
14490572 |
T |
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| Q |
208 |
actataaatttaattagta |
226 |
Q |
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| T |
14490573 |
aatataattttatttagta |
14490591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 43656365 - 43656485
Alignment:
| Q |
108 |
aggtaagggtatttccccatactaatcatattagactaatggttaggtattattaagtagaaattgtgattcataatcgtttaaagagagaagaaattta |
207 |
Q |
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||||||||| | ||||||||||| | ||||||| ||||||||||| |||||| |||||||| | |||| ||||| |||||||||||| |||||||| | |
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| T |
43656365 |
aggtaagggcacttccccatacttaacatattaaactaatggttatatattatagagtagaaagtatgatccataaccgtttaaagagaaaagaaattca |
43656464 |
T |
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| Q |
208 |
actataaatttaattagtaaa |
228 |
Q |
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| |||| |||| |||||||| |
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| T |
43656465 |
aatatacttttatttagtaaa |
43656485 |
T |
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