View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1036_low_11 (Length: 338)
Name: NF1036_low_11
Description: NF1036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1036_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 37305522 - 37305604
Alignment:
| Q |
226 |
tatattttgtttaagaggaaatagataatatatttgataattaaggaaaatatacatgaaatttaactgatggggtttgttttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37305522 |
tatattttgtttaagaggaaatagataatatatttgataagtaagg-aaatatacatgaaatttaactgatggggtttgttttt |
37305604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 6776101 - 6776024
Alignment:
| Q |
147 |
gagaaaatgatgtggcaggttgttattggatgattgtgtaaactgttttttacactgtgagtgcattacaattaaactc |
225 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| |||||||||| | |||||||||| |||||| ||||||||||||| |
|
|
| T |
6776101 |
gagaagatgatgtggcagattgttattggatgactgtgtaaact-atctttacactgtcagtgcactacaattaaactc |
6776024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 6776275 - 6776352
Alignment:
| Q |
147 |
gagaaaatgatgtggcaggttgttattggatgattgtgtaaactgttttttacactgtgagtgcattacaattaaactc |
225 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| |||||||||| | |||||||||| |||||| ||||||||||||| |
|
|
| T |
6776275 |
gagaagatgatgtggcagattgttattggatgactgtgtaaact-atctttacactgtcagtgcactacaattaaactc |
6776352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 818514 - 818599
Alignment:
| Q |
147 |
gagaaaatgatgtggcaggttgttattggatgattgtgtaaactgttttttacactgtgagtgcattacaattaaactctatatttt |
233 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||||| | |||||||||| | |||| |||||||||||||| |||||| |
|
|
| T |
818514 |
gagaagatgatgtggcaaattgttattggatgactgtgtaaact-atctttacactgtcaatgcactacaattaaactctttatttt |
818599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 817991 - 817912
Alignment:
| Q |
147 |
gagaaaatgatgtggcaggttgttattggatgattgtgtaaactgttttttacactgtgagtgcattacaattaaactcta |
227 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| ||||||| || | |||||||||| |||| | ||||||||||||||| |
|
|
| T |
817991 |
gagaagatgatgtggcagattgttattggatgactgtgtaatct-atctttacactgtcagtgaactacaattaaactcta |
817912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University