View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1036_low_13 (Length: 282)
Name: NF1036_low_13
Description: NF1036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1036_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 170 - 253
Target Start/End: Original strand, 37305522 - 37305604
Alignment:
| Q |
170 |
tatattttgtttaagaggaaatagataatatatttgataattaaggaaaatatacatgaaatttaactgatggggtttgttttt |
253 |
Q |
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| T |
37305522 |
tatattttgtttaagaggaaatagataatatatttgataagtaagg-aaatatacatgaaatttaactgatggggtttgttttt |
37305604 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 6776101 - 6776024
Alignment:
| Q |
91 |
gagaaaatgatgtggcaggttgttattggatgattgtgtaaactgttttttacactgtgagtgcattacaattaaactc |
169 |
Q |
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| T |
6776101 |
gagaagatgatgtggcagattgttattggatgactgtgtaaact-atctttacactgtcagtgcactacaattaaactc |
6776024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 6776275 - 6776352
Alignment:
| Q |
91 |
gagaaaatgatgtggcaggttgttattggatgattgtgtaaactgttttttacactgtgagtgcattacaattaaactc |
169 |
Q |
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| T |
6776275 |
gagaagatgatgtggcagattgttattggatgactgtgtaaact-atctttacactgtcagtgcactacaattaaactc |
6776352 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 818514 - 818599
Alignment:
| Q |
91 |
gagaaaatgatgtggcaggttgttattggatgattgtgtaaactgttttttacactgtgagtgcattacaattaaactctatatttt |
177 |
Q |
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| T |
818514 |
gagaagatgatgtggcaaattgttattggatgactgtgtaaact-atctttacactgtcaatgcactacaattaaactctttatttt |
818599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 817991 - 817912
Alignment:
| Q |
91 |
gagaaaatgatgtggcaggttgttattggatgattgtgtaaactgttttttacactgtgagtgcattacaattaaactcta |
171 |
Q |
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| T |
817991 |
gagaagatgatgtggcagattgttattggatgactgtgtaatct-atctttacactgtcagtgaactacaattaaactcta |
817912 |
T |
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