View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1036_low_15 (Length: 252)
Name: NF1036_low_15
Description: NF1036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1036_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 42468247 - 42468007
Alignment:
| Q |
1 |
tgttaattacgtaagctagctacatattgatccgcatcacgcaggatgaaaataatataagcttcgttatgtatttcatccctacaaatatattgttact |
100 |
Q |
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||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
42468247 |
tgttaattatgtaagctagctacatattgacctgcatcacgcaggatgaaaataatataagcttcattatgtatttcatccctacaaatatattgt-act |
42468149 |
T |
|
| Q |
101 |
agtcaatatgtcttttccattaataatgagtgtatacttattgagctattacttgctcagatgtgtcgaagttttctggtcnnnnnnnnctcttggataa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42468148 |
agtcaatatgtcttttccattaataatgagtgtatgcttattgagctattacttgctcagatgtgtcgaagttttctggtcttttttctctcttggataa |
42468049 |
T |
|
| Q |
201 |
aagattcaacatttactgatagaaaactcgctataagaataa |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42468048 |
aagattcaacatttactgatagaaaactcgctataagaataa |
42468007 |
T |
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