View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1036_low_17 (Length: 210)
Name: NF1036_low_17
Description: NF1036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1036_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 34161661 - 34161464
Alignment:
| Q |
9 |
agtcatccttagcttttgcatcaagttactagcatacacacctccaagacctaatctgtccaacccagttcactggttaagtcggttagagcttgcactc |
108 |
Q |
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| T |
34161661 |
agtcatccttagcttttgcatcaagttattagcatacacacctccaagacctaatctgtccaacccagttcaatggttaagtcggttagagcttgcactc |
34161562 |
T |
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| Q |
109 |
actcactcacacgatctcttccttaatcttctcaatttccttccttttatacacttaatccaacacactaacttcacttcacttctgcatcagtatcaaa |
208 |
Q |
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| T |
34161561 |
ac----tcacacgatctcctccttaatcttctcaacttccttccttttatactcttaatccaacacactaacttcacgtcacttctgcatcagtatcaaa |
34161466 |
T |
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