View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1036_low_6 (Length: 376)
Name: NF1036_low_6
Description: NF1036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1036_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 159 - 365
Target Start/End: Original strand, 38932474 - 38932684
Alignment:
| Q |
159 |
ggaataatactgtaaagagatgaccccactcaaaaaagatacataatccaaagtggaagatgcgtccacccaatttcatttctaaaaccgtgcgtccaca |
258 |
Q |
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| T |
38932474 |
ggaataatactgtaaagagatgaccccactcaaaaaaggtacataatccaaagtggaagatgcgtccacccaatttcatttctaaaaccgtgcgtccaca |
38932573 |
T |
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| Q |
259 |
gtta----ctctcaatcgttgatcaactcgctcaactcaccatacaagatcacaacaaggagcatccatggtttccgattctcctcacaatctccatcaa |
354 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
38932574 |
gttactctctctcaatcgttgatcaactcgctcaactcagcatacaagatcacaacaacgagcatccatggtttccgattctcctcacaatctccatcga |
38932673 |
T |
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| Q |
355 |
gtctgtttcat |
365 |
Q |
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|||| |||||| |
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| T |
38932674 |
gtctctttcat |
38932684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 38932265 - 38932409
Alignment:
| Q |
1 |
caaacacgcttacaaatgagatcaaaatttagaaaacatttnnnnnnnnnn-gcatagtttgcagttaatttatttaaagtttaataaataaaa-agcag |
98 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38932265 |
caaacacgcttacaaacgagatcaaaatttagaaaacatttaaaaaaaaatagcatagtttgcagttaatttatttaaagtttaataaataaaaaagcag |
38932364 |
T |
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| Q |
99 |
ggcaactatgattggcagttggcacgagacaagtcccttcagtag |
143 |
Q |
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| T |
38932365 |
ggcaactatgattggcagttggcacgagacaagtcccttcagtag |
38932409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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