View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1036_low_9 (Length: 351)
Name: NF1036_low_9
Description: NF1036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1036_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 34161322 - 34161661
Alignment:
| Q |
1 |
ttatgaagcttcccagaaggtgaatattcttcaaataaaagagtctattattagaacataattgaattgaaggtatggcaggaaaggtagtggagttatt |
100 |
Q |
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| T |
34161322 |
ttatgaagcttcccagaaggtgaatattcttcaaataaaagagtctattattagaacataattgaattgaaattatggcaggaaaggtagtggagttatt |
34161421 |
T |
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| Q |
101 |
cttacctcaaacttgcactaggatagggtctatgaatgagagagtttgatactgatgcagaagtgacgtgaagttagtgtgttggattaagagtataaaa |
200 |
Q |
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| T |
34161422 |
cttacctcaaacttgcactaggatagggtctatgaatgagagagtttgatactgatgcagaagtgacgtgaagttagtgtgttggattaagagtataaaa |
34161521 |
T |
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| Q |
201 |
ggaaggaaattgagaagattaaggaagagatcgtgtgagtgagtgagtgcaagctctaaccgacttaaccagtgaactgggttggacagattaggtcttg |
300 |
Q |
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|||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34161522 |
ggaaggaagttgagaagattaaggaggagatcgt----gtgagtgagtgcaagctctaaccgacttaaccattgaactgggttggacagattaggtcttg |
34161617 |
T |
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| Q |
301 |
gaggtgtgtatgctagtaacttgatgcaaaagctaaggatgact |
344 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34161618 |
gaggtgtgtatgctaataacttgatgcaaaagctaaggatgact |
34161661 |
T |
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