View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10370_low_3 (Length: 330)

Name: NF10370_low_3
Description: NF10370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10370_low_3
NF10370_low_3
[»] chr2 (19 HSPs)
chr2 (32-254)||(6903140-6903362)
chr2 (32-145)||(4616135-4616248)
chr2 (32-146)||(32737403-32737517)
chr2 (32-146)||(37892172-37892286)
chr2 (32-145)||(40642887-40643000)
chr2 (32-145)||(41191917-41192030)
chr2 (32-145)||(35151060-35151173)
chr2 (32-145)||(37057660-37057773)
chr2 (32-145)||(21084206-21084319)
chr2 (50-145)||(5814125-5814220)
chr2 (32-141)||(6729060-6729168)
chr2 (32-145)||(26257308-26257420)
chr2 (161-253)||(32737323-32737415)
chr2 (32-122)||(34619473-34619563)
chr2 (32-109)||(2194735-2194812)
chr2 (32-145)||(5290232-5290345)
chr2 (161-254)||(37892274-37892366)
chr2 (32-114)||(1888365-1888447)
chr2 (134-188)||(13785602-13785656)
[»] chr3 (9 HSPs)
chr3 (32-254)||(8628832-8629054)
chr3 (32-254)||(47067550-47067775)
chr3 (32-145)||(2448061-2448174)
chr3 (32-145)||(49741631-49741744)
chr3 (32-145)||(49303649-49303762)
chr3 (36-145)||(23030079-23030188)
chr3 (32-145)||(49501065-49501178)
chr3 (32-145)||(41650395-41650508)
chr3 (134-188)||(25744598-25744652)
[»] chr1 (16 HSPs)
chr1 (32-248)||(20533380-20533596)
chr1 (32-248)||(20447615-20447829)
chr1 (36-172)||(30858946-30859083)
chr1 (32-145)||(10308959-10309072)
chr1 (32-145)||(22605885-22605998)
chr1 (32-145)||(43138174-43138287)
chr1 (32-145)||(7014304-7014417)
chr1 (32-145)||(33686075-33686187)
chr1 (98-208)||(50315195-50315305)
chr1 (32-145)||(15399572-15399685)
chr1 (32-145)||(45052556-45052669)
chr1 (32-108)||(49151092-49151168)
chr1 (33-83)||(49150963-49151013)
chr1 (203-254)||(30859081-30859132)
chr1 (218-254)||(50317116-50317152)
chr1 (218-254)||(22606009-22606045)
[»] chr4 (19 HSPs)
chr4 (32-254)||(37693943-37694165)
chr4 (32-145)||(54808535-54808649)
chr4 (32-145)||(778988-779101)
chr4 (32-145)||(33985015-33985128)
chr4 (32-145)||(42119419-42119532)
chr4 (32-145)||(45042552-45042665)
chr4 (32-145)||(52789843-52789956)
chr4 (32-145)||(9242437-9242550)
chr4 (32-145)||(34938897-34939010)
chr4 (32-145)||(36046418-36046531)
chr4 (37-131)||(47020537-47020631)
chr4 (32-145)||(52032230-52032343)
chr4 (34-145)||(54704086-54704196)
chr4 (159-248)||(9242362-9242450)
chr4 (33-83)||(51243258-51243308)
chr4 (97-145)||(36554049-36554096)
chr4 (203-254)||(778939-778990)
chr4 (203-254)||(42119530-42119581)
chr4 (134-188)||(42039533-42039587)
[»] chr6 (4 HSPs)
chr6 (32-254)||(2419213-2419435)
chr6 (32-145)||(11599349-11599462)
chr6 (36-145)||(3514224-3514333)
chr6 (97-145)||(30633872-30633920)
[»] scaffold0753 (1 HSPs)
scaffold0753 (33-248)||(4463-4678)
[»] chr7 (10 HSPs)
chr7 (32-248)||(30362154-30362370)
chr7 (36-172)||(33803372-33803508)
chr7 (32-145)||(37450445-37450558)
chr7 (32-145)||(3741899-3742012)
chr7 (32-145)||(4034692-4034805)
chr7 (32-145)||(14678751-14678864)
chr7 (31-78)||(39294527-39294574)
chr7 (32-145)||(40144376-40144479)
chr7 (134-175)||(37523656-37523697)
chr7 (218-254)||(33803521-33803557)
[»] chr8 (11 HSPs)
chr8 (32-145)||(42183105-42183218)
chr8 (32-145)||(15739242-15739355)
chr8 (34-145)||(1218234-1218343)
chr8 (36-145)||(23810226-23810335)
chr8 (32-145)||(35162071-35162184)
chr8 (32-145)||(4758735-4758850)
chr8 (46-145)||(5912640-5912739)
chr8 (32-122)||(9040107-9040197)
chr8 (36-83)||(2766444-2766491)
chr8 (203-254)||(42183216-42183267)
chr8 (203-248)||(5912597-5912642)
[»] chr5 (14 HSPs)
chr5 (32-145)||(2787149-2787262)
chr5 (32-145)||(7661742-7661855)
chr5 (32-145)||(14804157-14804270)
chr5 (31-145)||(40032199-40032313)
chr5 (32-144)||(18171669-18171780)
chr5 (32-145)||(1081432-1081545)
chr5 (32-145)||(12144487-12144598)
chr5 (97-145)||(34954430-34954478)
chr5 (203-254)||(40032150-40032201)
chr5 (203-254)||(43146950-43147001)
chr5 (134-188)||(16101351-16101405)
chr5 (34-83)||(43147036-43147085)
chr5 (69-145)||(8688571-8688647)
chr5 (203-254)||(14804108-14804159)
[»] scaffold0217 (1 HSPs)
scaffold0217 (32-83)||(25960-26011)
[»] scaffold0051 (1 HSPs)
scaffold0051 (32-83)||(20535-20586)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 6903362 - 6903140
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||| |||||||| ||||||||||||    
T  6903362 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgttttccccaacaggactgatcactattttccccaagagccattgttatatac 6903263  T
Q  132 cgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgttt 231  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||    
T  6903262 cgaagagggtaaaaataactttttaccccaagagggtaaaaagatattaagtagattagtgaattcaaataaaatatatgtattgcttattgtaatgttt 6903163  T
Q  232 gaatgatattaataaaaggagag 254  Q
    ||||||||||||||||| |||||    
T  6903162 gaatgatattaataaaacgagag 6903140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 4616248 - 4616135
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  4616248 gtataaaaggaaccaaatttaaatttaactcaagggatcttgatgtcgttttcccctacaagacggatcactattttccccaagagctattgatatatac 4616149  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  4616148 cgaagagggtaaaa 4616135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 32737517 - 32737403
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||  ||||||    
T  32737517 gtataaaaggaaccaaatttaaatttaactcaagggatcttgatgtcgttttccccaacaggaccaatcactattttctccaagagctattggcatatac 32737418  T
Q  132 cgaagagggtaaaaa 146  Q
     ||||||||||||||    
T  32737417 tgaagagggtaaaaa 32737403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 37892172 - 37892286
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||| |||  |||||||||||| |||||||||||||  ||||||    
T  37892172 gtataaaaggaaccaaatttagatttaactcaagggatcttgatgtcgttttccccaacatgacgtatcactattttccccaagagctattggcatatac 37892271  T
Q  132 cgaagagggtaaaaa 146  Q
    |||||||||||||||    
T  37892272 cgaagagggtaaaaa 37892286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 40642887 - 40643000
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||| ||||||||||||| |||||||||||||  ||||||    
T  40642887 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttccccaacatgacagatcactattttccccaagagctattggcatatac 40642986  T
Q  132 cgaagagggtaaaa 145  Q
     |||||||||||||    
T  40642987 agaagagggtaaaa 40643000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 41192030 - 41191917
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| || ||||| |||||| ||| ||||||| ||||||||||||| |||||||||||||  ||||||    
T  41192030 gtataaaaggaaccaaatttaaatttaactcaagggttcctgatgccgttttccccaacaagacggatcactattttccccaagagctattggcatatac 41191931  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  41191930 cgaagagggtaaaa 41191917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 35151173 - 35151060
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||| | |||||||| |||||||| ||||||  || ||| ||| ||||||||||||| |||||||||||||| ||||||    
T  35151173 gtataaaaggaaccaaatttaaattaaactcaaggggtcttgatgccgttttctcccacaggacggatcactattttccccaagagctattgtcatatac 35151074  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  35151073 cgaagagggtaaaa 35151060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 37057660 - 37057773
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||| ||| |||||||| |||  | ||||||||||| |||||||    
T  37057660 gtataaaaggaaccaaatttaaatttaactcaagggatcttgttgtcgttttccccaacaggacggatcactactttgcctaagagctattggtatatac 37057759  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  37057760 cgaagagggtaaaa 37057773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 21084206 - 21084319
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||||| || ||| |||  |||| ||||||| |||||||||||||  ||||||    
T  21084206 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatttcgttttttccaacaggacgaatcattattttccccaagagctattgacatatac 21084305  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||| ||||    
T  21084306 cgaagagggaaaaa 21084319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 5814220 - 5814125
Alignment:
Q  50 ttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccgaagagggtaaaa 145  Q
    ||||||||| |||||||||||||||||||||||| ||| ||| ||  |||||||||||||||||||||||||||  |||||| |||||||||||||    
T  5814220 ttaaatttaactcaagggatcttgatgtcgttttccccaacaggatggatcactattttctccaagagctattgacatatacggaagagggtaaaa 5814125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 6729060 - 6729168
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||| |||||||||| |||||||  |||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||||  |||| |    
T  6729060 gtataaaaggaaccaactttaaatttaactcaaggagtcttcatgtcgtttttcccaacatgacggatcactattttccccaagagctattggcatat-c 6729158  T
Q  132 cgaagagggt 141  Q
    ||||||||||    
T  6729159 cgaagagggt 6729168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 26257420 - 26257308
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||  |||||| | ||| ||| |||||||| |||  ||||||||||||| |||||||    
T  26257420 gtataaaaggaaccaaatttaaatttaaatcaaggggtcttgatgta-tttttctcaacaggacggatcactactttacccaagagctattggtatatac 26257322  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  26257321 cgaagagggtaaaa 26257308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 32737415 - 32737323
Alignment:
Q  161 aagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggaga 253  Q
    ||||||||||||||||||||||||||||  ||| ||  ||| |||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  32737415 aagagggtaaaaagatattaagtagattattgaattggaataaaatatatgtattgcttattgtaatctttgaatgatattaataaaatgaga 32737323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 122
Target Start/End: Complemental strand, 34619563 - 34619473
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctatt 122  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| |||  |||||||||||| ||||||| ||||    
T  34619563 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttccccaacatgacatatcactattttccccaagagttatt 34619473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 2194812 - 2194735
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttc 109  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||  ||| ||| ||||| |||||||    
T  2194812 gtataaaatgaaccaaatttaaatttaactcaagggatcttgatgtcgtttttccaaacaggacggatcattattttc 2194735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 5290345 - 5290232
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| ||||| ||| |||  || ||||||||||||  ||||||  || || || ||||    
T  5290345 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgttgttttccccaacagaacggatcactattttgcccaagaattagtggtacatac 5290246  T
Q  132 cgaagagggtaaaa 145  Q
    |||||| |||||||    
T  5290245 cgaagacggtaaaa 5290232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 254
Target Start/End: Original strand, 37892274 - 37892366
Alignment:
Q  161 aagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    ||||||||||||| |||||||||||||| |||| ||  ||| || ||| |||||||||||||||||| |||||||||||||||||||| |||||    
T  37892274 aagagggtaaaaa-atattaagtagattagtgaattggaataaactatatgtattgcttattgtaatctttgaatgatattaataaaatgagag 37892366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 1888365 - 1888447
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaa 114  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||||  || ||| ||| ||||||||||||| ||||    
T  1888365 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcattttctccaacaggacggatcactattttccccaa 1888447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 13785602 - 13785656
Alignment:
Q  134 aagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagatt 188  Q
    ||||||||||||| ||||||||||  |||||||||||||||| | ||||||||||    
T  13785602 aagagggtaaaaagaactttttaccacaagagggtaaaaagaaaataagtagatt 13785656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 8628832 - 8629054
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||| ||||||||||||| ||||||||||||| |||||||    
T  8628832 gtataaaatgaaccaaatttaaatttatctcaagggatcttgatgtcgttttccccaacaggacagatcactattttccccaagagctattggtatatac 8628931  T
Q  132 cgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgttt 231  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||| ||    
T  8628932 ctaagagggtaaaaataactttttaccccaagagggtaaaaagatattaagtagattagtgaattcaaataaaatatatgtattgcttattgtaatggtt 8629031  T
Q  232 gaatgatattaataaaaggagag 254  Q
    |||||||| |||||||| |||||    
T  8629032 gaatgataataataaaacgagag 8629054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 47067775 - 47067550
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacct---caagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttata 128  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||||||||||| ||| ||| ||| ||||||||||||  |||||||||||||  |||    
T  47067775 gtataaaaggaaccaaatttaaatttaactactcaagggatcttgatgtcgttttccccaacaggacggatcactatttttcccaagagctattggcata 47067676  T
Q  129 taccgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatg 228  Q
    ||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||| ||  ||| |||||| |||||||||||||| |||     
T  47067675 tactgaagagggtaaaaataactttttaccacaagagggtaaaaagatattaagtagattagtgaattggaataaaatatatgtattgcttattgaaatc 47067576  T
Q  229 tttgaatgatattaataaaaggagag 254  Q
    |||||||||||||||||||| |||||    
T  47067575 tttgaatgatattaataaaatgagag 47067550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 2448061 - 2448174
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||  ||||||    
T  2448061 gtataaaaggaaccaaatttaaatttaactcaaagggtcttgatgtcgttttccccaacaagacggatcactattttccccaagagctattgacatatac 2448160  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  2448161 cgaagagggtaaaa 2448174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 49741744 - 49741631
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||  ||||||||||||| |||||||||||||  ||||||    
T  49741744 gtataaaaggaaccaaatttaaatttaactcaagggatcttgatgtcgttttccccaacaggaaggatcactattttccccaagagctattggcatatac 49741645  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  49741644 cgaagagggtaaaa 49741631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 49303649 - 49303762
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||| ||| ||| ||||||||||||| ||||||| ||||| |||||||    
T  49303649 gtataaaaggaaccaaatttaaatttaactcaaggggtcttaatgtcgttttccccaacaggactgatcactattttccccaagagttattggtatatac 49303748  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  49303749 cgaagagggtaaaa 49303762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 23030079 - 23030188
Alignment:
Q  36 aaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccgaa 135  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||||| ||| ||||||  |||| |||||||| |||||||||||||  ||||||||||    
T  23030079 aaaaggaacccaatttaaatttaactcaaggggtcttgatgtcgttttccccaacaagatggatcgctattttccccaagagctattggcatataccgaa 23030178  T
Q  136 gagggtaaaa 145  Q
    ||||||||||    
T  23030179 gagggtaaaa 23030188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 49501178 - 49501065
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||| ||||||| ||||  |||||||| ||||  ||||||    
T  49501178 gtataaaagaaaccaaatttaaatttaactcaaggggtcttgatgtcgttttccccaacaggacggatcactgtttttcccaagagcgattggcatatac 49501079  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  49501078 cgaagagggtaaaa 49501065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 41650395 - 41650508
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||| | | ||||||| ||||| | | | | ||| || |||||||||| |||| || |||||  ||||||    
T  41650395 gtataaaaggaaccaaatttaaatttaactcaagaggttttgatgttgttttcctcaataggacggaacactattttccccaatagttattggcatatac 41650494  T
Q  132 cgaagagggtaaaa 145  Q
    |||| |||||||||    
T  41650495 cgaatagggtaaaa 41650508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 25744652 - 25744598
Alignment:
Q  134 aagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagatt 188  Q
    |||||||| |||| |||||||| | ||||||||||||||||| | ||||||||||    
T  25744652 aagagggttaaaagaactttttcccccaagagggtaaaaagaaaataagtagatt 25744598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 20533380 - 20533596
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||  || | ||||||||||| |||||||||||||||||||||    
T  20533380 gtataaaaggaaccaaatttaaatttacctcaagggatcttaatgtcgtttttccaaacagaactggtcactattttccccaagagctattgttatatac 20533479  T
Q  132 cgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgttt 231  Q
     ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||    
T  20533480 ggaagagggtaaaaattactttttacctcaagagggtaaaaagatattaagtagattagtgaattcaaataaaatatatgtattgcttattgtaatgttt 20533579  T
Q  232 gaatgatattaataaaa 248  Q
    |||||||||||||||||    
T  20533580 gaatgatattaataaaa 20533596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 20447615 - 20447829
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  |||  || | ||||||||||| |||||||||||||||||||||    
T  20447615 gtataaaaggaaccaaatttaaatttacctcaagggatcttaatgtcgtttt-ccaaacagaactggtcactattttccccaagagctattgttatatac 20447713  T
Q  132 cgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgttt 231  Q
     ||||||||||||| || ||||||||  ||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||    
T  20447714 ggaagagggtaaaatta-ctttttacctcaagagggtaaaaagatattaagtagattagtgaattcaaataaaatatatgtattgcttattgtaatgttt 20447812  T
Q  232 gaatgatattaataaaa 248  Q
    |||||||||||||||||    
T  20447813 gaatgatattaataaaa 20447829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 30858946 - 30859083
Alignment:
Q  36 aaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccgaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  30858946 aaaaggaaccaaatttaaatttacctcaagggatcttgatgtctttttccccaacaagacagatcactattttccccaagagctattgttatataccgaa 30859045  T
Q  136 gagggtaaaaataac-tttttactccaagagggtaaaa 172  Q
    ||||||||||||||| |||||| ||||||||| |||||    
T  30859046 gagggtaaaaataacttttttattccaagaggataaaa 30859083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 10308959 - 10309072
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||  ||||||||||||| |||||||||||||  ||||||    
T  10308959 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttccccaacaggatggatcactattttccccaagagctattggcatatac 10309058  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  10309059 cgaagagggtaaaa 10309072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 22605885 - 22605998
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||| ||| ||||||||||||  ||||||||||||| |||| ||    
T  22605885 gtataaaaggaaccaaatttaaatttaactcaagggattttgatgtcgttttccccaacaggacggatcactatttttcccaagagctattggtatacac 22605984  T
Q  132 cgaagagggtaaaa 145  Q
     |||||||||||||    
T  22605985 tgaagagggtaaaa 22605998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 43138287 - 43138174
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||||||||||| || ||| ||| ||||||||||||| |||||||||||||   |||||    
T  43138287 gtataaaaggaaccaaatttaaatttaactcaaggggtcttaatgtcgttttttccaacaggacggatcactattttccccaagagctattggcttatac 43138188  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  43138187 cgaagagggtaaaa 43138174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 7014417 - 7014304
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||| ||| ||| ||||||||||||| |||||||||||||  ||||||    
T  7014417 gtataaaaggaaccaaatttaaatttaactcaaggggtcttaatgtcgttttccccaacaggacggatcactattttccccaagagctattggcatatac 7014318  T
Q  132 cgaagagggtaaaa 145  Q
    | ||||||| ||||    
T  7014317 caaagagggaaaaa 7014304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 33686187 - 33686075
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||| |||  || ||| ||||||||||||| |||||||||||||  ||||||    
T  33686187 gtataaaaggaaccaaatttaaatttaactcaaggg-tcttgacgtcgttttccccagcaggacggatcactattttccccaagagctattgacatatac 33686089  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  33686088 cgaagagggtaaaa 33686075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 50315195 - 50315305
Alignment:
Q  98 atcactattttctccaagagctattgttatataccgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttc 197  Q
    |||| ||||||| |||||| | |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| |||    
T  50315195 atcattattttccccaagaaccattgctatatatcgaagagggtaaaaataactttttaccccaagagggtaaaaagataataagtagattagtgaattc 50315294  T
Q  198 aaattaaatat 208  Q
    || | ||||||    
T  50315295 aagtaaaatat 50315305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 15399572 - 15399685
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||| ||| ||| ||| ||| |||||||| |||  ||||||||||||| |||||||    
T  15399572 gtataaaaggaatcaaatttaaatttaactcaaggggtcttgatgtcgctttccccaacatgacggatcactactttgcccaagagctattggtatatac 15399671  T
Q  132 cgaagagggtaaaa 145  Q
    |||||||| |||||    
T  15399672 cgaagaggataaaa 15399685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 45052669 - 45052556
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||| |||| ||||| |  |||||||| |||||| ||| |||  || ||||||||||||| ||||||||||||| |||||||    
T  45052669 gtataaaaggaaccaaatttaattttaactcaatgagtcttgatgccgttttccccaacataacggatcactattttccccaagagctattggtatatac 45052570  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  45052569 cgaagagggtaaaa 45052556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 49151092 - 49151168
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactatttt 108  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||  ||| ||| ||||| ||||||    
T  49151092 gtataaaaggaatcaaatttaaatttaactcaaggggtcttgatgtcgttttccctaacaggacggatcattatttt 49151168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 49150963 - 49151013
Alignment:
Q  33 tataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttt 83  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||    
T  49150963 tataaaaggaatcaaatttaaatttaactcaaggggtcttgatgtcgtttt 49151013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 30859081 - 30859132
Alignment:
Q  203 aaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||| |||||    
T  30859081 aaatatatgtattaattattgtaatgtttgaatgatattaataaaatgagag 30859132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 50317116 - 50317152
Alignment:
Q  218 ttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    ||||||||||||||||||||||||||||||| |||||    
T  50317116 ttattgtaatgtttgaatgatattaataaaacgagag 50317152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 22606009 - 22606045
Alignment:
Q  218 ttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||||||| |||||||||||||||||||| |||||    
T  22606009 ttattgtaatttttgaatgatattaataaaatgagag 22606045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 37694165 - 37693943
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||| |||||||| ||| ||| ||||||||||||| |||||||||||||| ||||||    
T  37694165 gtataaaaggaaccaaatttaaatttaaatcaagggatcttaatgtcatttttcccaacaggacagatcactattttccccaagagctattgtcatatac 37694066  T
Q  132 cgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgttt 231  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||| |||| ||| ||| |||||| ||||||||||||||||||||||    
T  37694065 cgaagagggtaaacataactttttaccccaagagggtaaaaagatattaagtatattagtgaattccaataaaatatatgtattgcttattgtaatgttt 37693966  T
Q  232 gaatgatattaataaaaggagag 254  Q
    ||||||||||||||||| |||||    
T  37693965 gaatgatattaataaaatgagag 37693943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 54808649 - 54808535
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttt-tccctacaagaccgatcactattttctccaagagctattgttatata 130  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||| ||| ||| ||||||||||||| |||||||||||||  |||||    
T  54808649 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttcccccaacaggacggatcactattttccccaagagctattggcatata 54808550  T
Q  131 ccgaagagggtaaaa 145  Q
    |||||||||||||||    
T  54808549 ccgaagagggtaaaa 54808535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 779101 - 778988
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||  || ||| ||| ||||||||||||| ||||||||||||| |||||||    
T  779101 gtataaaaggaaccaaatttaaatttaactcaaggaatcttaatgtcattttctccaacatgacggatcactattttccccaagagctattggtatatac 779002  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  779001 cgaagagggtaaaa 778988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 33985128 - 33985015
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | | |||  ||||||||||| |||||| |||||||  ||||||    
T  33985128 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgtttttcccaataggacgaatcactattttttccaagggctattggcatatac 33985029  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  33985028 cgaagagggtaaaa 33985015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 42119419 - 42119532
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||| ||| ||| | ||||||||||| ||||||| ||||| |||||||    
T  42119419 gtataaaaggaaccaaatttaaatttaactcgaggtatcttgatgtcgttttccccaacaggacagttcactattttccccaagagttattggtatatac 42119518  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  42119519 cgaagagggtaaaa 42119532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 45042665 - 45042552
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||| ||| |||   ||| ||||||||||||||||||||| |||||||    
T  45042665 gtataaaaggaaccaaatttaaatttaactcaaggaatcatgatgtcgttttccccaacaggacgtgtcattattttctccaagagctattggtatatac 45042566  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  45042565 cgaagagggtaaaa 45042552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 52789843 - 52789956
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| | | ||| ||| |||||||| |||| |||||||||||||  ||||||    
T  52789843 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttcctcaacatgacggatcactactttccccaagagctattggcatatac 52789942  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  52789943 cgaagagggtaaaa 52789956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 9242550 - 9242437
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||| ||| | ||||||||||  |||||||||||||  ||||||    
T  9242550 gtataaaaggaaccaaatttaaatttacctcatgggatcttgatgtctttttccccaacaggactggtcactatttttcccaagagctattgcaatatac 9242451  T
Q  132 cgaagagggtaaaa 145  Q
    | ||||||||||||    
T  9242450 ccaagagggtaaaa 9242437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 34939010 - 34938897
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||  ||| ||| ||||||||||||  |||||||||||||  ||||||    
T  34939010 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatatcgttttcccgaacaggacggatcactatttttcccaagagctattggcatatac 34938911  T
Q  132 cgaagagggtaaaa 145  Q
     |||||||||||||    
T  34938910 agaagagggtaaaa 34938897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 36046531 - 36046418
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||||||||| |  ||| ||| ||||| ||||||| ||||||| ||||   ||||||    
T  36046531 gtataaaaggaaccaaatttaagtttaactcaaggggtcttgatgtcgttttttcaaacaggacggatcattattttccccaagagttatttgcatatac 36046432  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  36046431 cgaagagggtaaaa 36046418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 47020537 - 47020631
Alignment:
Q  37 aaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||  |||||||| ||| |||||||||||||| |||||||    
T  47020537 aaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttccccaacaggatggatcactactttgtccaagagctattggtatatac 47020631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 52032343 - 52032230
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctcca-agagctattgttatata 130  Q
    |||||||||||||| |||||||||||| |||||| |||||| |||||||||| ||| ||| ||| |||||||||||| |||| |||||||||   |||||    
T  52032343 gtataaaaggaaccgaatttaaatttaactcaagagatcttcatgtcgttttccccaacaggacggatcactatttt-tccatagagctattagcatata 52032245  T
Q  131 ccgaagagggtaaaa 145  Q
    |||||||||||||||    
T  52032244 ccgaagagggtaaaa 52032230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 54704086 - 54704196
Alignment:
Q  34 ataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccg 133  Q
    ||||||||||| ||||||||||||| ||||| || ||||||||| ||||| ||| ||| ||| ||||||||||||  |||||||||||||  |||||| |    
T  54704086 ataaaaggaactaaatttaaatttaactcaatgggtcttgatgttgtttt-cccaacaggacggatcactatttttcccaagagctattgacatatacgg 54704184  T
Q  134 aagagggtaaaa 145  Q
    ||||||||||||    
T  54704185 aagagggtaaaa 54704196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 9242450 - 9242362
Alignment:
Q  159 ccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgtttgaatgatattaataaaa 248  Q
    |||||||||||||| |||| |||||||||| |||| ||||||| | |||| ||||||  |||||||||||||||||||||||||||||||    
T  9242450 ccaagagggtaaaa-gataataagtagattagtgaattcaaataagatatatgtattaattattgtaatgtttgaatgatattaataaaa 9242362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 51243258 - 51243308
Alignment:
Q  33 tataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttt 83  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51243258 tataaaaggaaccaaatttaaatttaactcaagggatcttgatgtcgtttt 51243308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 36554049 - 36554096
Alignment:
Q  97 gatcactattttctccaagagctattgttatataccgaagagggtaaaa 145  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  36554049 gatcactattttctccaagagcta-tgtcatataccgaagagggtaaaa 36554096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 778990 - 778939
Alignment:
Q  203 aaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||| ||||||  |||||||||||||||||| |||||||||||| |||||    
T  778990 aaatatatgtattaattattgtaatgtttgaatcatattaataaaatgagag 778939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 42119530 - 42119581
Alignment:
Q  203 aaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||| ||||||  |||||||||||||||||| |||||||||||| |||||    
T  42119530 aaatatatgtattaattattgtaatgtttgaatcatattaataaaatgagag 42119581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 42039533 - 42039587
Alignment:
Q  134 aagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagatt 188  Q
    ||||||||||||| |||||||||| |||| |||||||||||| | ||| ||||||    
T  42039533 aagagggtaaaaagaactttttaccccaatagggtaaaaagaaaataaatagatt 42039587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 2419435 - 2419213
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| | | ||| ||||||||||||| ||||||||||||| |||||||    
T  2419435 gtataaaaggaaccaaatttaaatttacctcaagggattttgatgtctttttccccaagaggactgatcactattttccccaagagctattgctatatac 2419336  T
Q  132 cgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgttt 231  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||| || | ||||||| |||||| ||||||  ||||||||||||||    
T  2419335 cgaagagggtaaaaataactttttatcccaagagggtaaaaagataataagtagattagtaaattcaaataaaatatatgtattaattattgtaatgttt 2419236  T
Q  232 gaatgatattaataaaaggagag 254  Q
    ||||||||||||||||| |||||    
T  2419235 gaatgatattaataaaatgagag 2419213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 11599349 - 11599462
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||| |||||||||||||||||||| ||||||||  |||||||||||||| ||| ||| ||| ||||||| ||||| |||||||||||||  ||||||    
T  11599349 gtataagaggaaccaaatttaaatttaactcaaggggccttgatgtcgttttccccaacaggacggatcactgttttccccaagagctattggcatatac 11599448  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  11599449 cgaagagggtaaaa 11599462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 3514333 - 3514224
Alignment:
Q  36 aaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccgaa 135  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||| || ||| ||| |||||||| |||  |||||| |||||| |||||||||||    
T  3514333 aaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttttccaacaggacggatcactactttgcccaagatctattggtatataccgaa 3514234  T
Q  136 gagggtaaaa 145  Q
    || |||||||    
T  3514233 gatggtaaaa 3514224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 30633920 - 30633872
Alignment:
Q  97 gatcactattttctccaagagctattgttatataccgaagagggtaaaa 145  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  30633920 gatcactattttctccaagagctattggcatataccgaagagggtaaaa 30633872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 33 - 248
Target Start/End: Original strand, 4463 - 4678
Alignment:
Q  33 tataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatacc 132  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| |||| ||| ||| ||| ||||||||||||| ||||||||||||| ||||||||    
T  4463 tataaaagaaaccaaatttaaatttacctcaaggaatcttgatgtctttttccccaacaggactgatcactattttccccaagagctattgctatatacc 4562  T
Q  133 gaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgtttg 232  Q
     |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| || |||| |||||| | ||||  ||||||||| |||||    
T  4563 caagagggtaaaaataactttttaccccaagagggtaaaaagataataagtagattagtgaatttaaataaaatatatctattaattattgtaacgtttg 4662  T
Q  233 aatgatattaataaaa 248  Q
    ||||||||||||||||    
T  4663 aatgatattaataaaa 4678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 248
Target Start/End: Complemental strand, 30362370 - 30362154
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||  |||||||||||| ||||| ||||| |||||||||||| ||| ||| | | |||||||||||||||||||||||||||  ||||||    
T  30362370 gtataaaaggaactgaatttaaatttaactcaatggatcctgatgtcgttttccccaacagggcggatcactattttctccaagagctattggcatatac 30362271  T
Q  132 cgaagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagattggtgatttcaaattaaatatgtgtattgcttattgtaatgttt 231  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||| |||| ||  ||| |||||  |||||||||||||||||| |||    
T  30362270 cgaagagggtaaaaataactttttacctcaagaaggtaaaaagatattaagtagattagtgagttggaataaaataaatgtattgcttattgtaatcttt 30362171  T
Q  232 gaatgatattaataaaa 248  Q
    |||||||||||||||||    
T  30362170 gaatgatattaataaaa 30362154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 33803372 - 33803508
Alignment:
Q  36 aaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccgaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| ||| ||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  33803372 aaaaggaaccaaatttaaatttacctcaagggatcttgatgtttttttccccaacaggacggatcactattttctccaagagctattggtatataccgaa 33803471  T
Q  136 gagggtaaaaataactttttactccaagagggtaaaa 172  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  33803472 gagggcaaaaataactttttaccccaagagggtaaaa 33803508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 37450445 - 37450558
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||| ||||||||||||| |||||||||||||  ||||||    
T  37450445 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttccccaacaggacggatcactattttccccaagagctattggcatatac 37450544  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  37450545 cgaagagggtaaaa 37450558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 3742012 - 3741899
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||| ||||| ||| ||| ||| ||||| ||||||| |||||||||||||  ||||||    
T  3742012 gtataaaatgaaccaaatttaaatttaactcaaggggtcttgatgttgttttccccaacaggacggatcattattttccccaagagctattggcatatac 3741913  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  3741912 cgaagagggtaaaa 3741899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 4034805 - 4034692
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||| ||||||||||||| ||||| || ||||||||||||||| ||| ||| ||| ||||||||| ||| |||||||||||||  ||||||    
T  4034805 gtataaaaggaactaaatttaaatttaactcaaagggtcttgatgtcgttttccccaacaggacggatcactatattccccaagagctattggcatatac 4034706  T
Q  132 cgaagagggtaaaa 145  Q
     |||||||||||||    
T  4034705 agaagagggtaaaa 4034692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 14678751 - 14678864
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagac-cgatcactattttctccaagagctattgttatata 130  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||  ||| ||| ||| |||  ||||||||||||| | |||||||||||  |||||    
T  14678751 gtataaatggaaccaaatttaaatttaactcaaggggtcttgatgtc-atttccccaacaggacgggatcactattttcccgaagagctattggaatata 14678849  T
Q  131 ccgaagagggtaaaa 145  Q
    |||||||||||||||    
T  14678850 ccgaagagggtaaaa 14678864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 39294527 - 39294574
Alignment:
Q  31 tgtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtc 78  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  39294527 tgtataaaaggaaccaaatttaaatttaactcaagggatcttgatgtc 39294574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 40144479 - 40144376
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||| ||||| |||          |||||||||||| | |||||||||||  |||||     
T  40144479 gtataaaaggaaccaaatttaaatttaactcaaggggacttgatgttgttttcccc----------atcactattttcccaaagagctattgacatatat 40144390  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  40144389 cgaagagggtaaaa 40144376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 37523697 - 37523656
Alignment:
Q  134 aagagggtaaaaataactttttactccaagagggtaaaaaga 175  Q
    ||||||||||||| |||||||||| |||||||||||||||||    
T  37523697 aagagggtaaaaaaaactttttaccccaagagggtaaaaaga 37523656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 33803521 - 33803557
Alignment:
Q  218 ttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||||||||||||||||||||||| |||| |||||    
T  33803521 ttattgtaatgtttgaatgatattaaaaaaatgagag 33803557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 42183105 - 42183218
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||| |||||||||||||||| |||||||| |||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||||| |||||||    
T  42183105 gtataaaaggcaccaaatttaaatttaactcaaggggtcttaatgtcgtttttcccaacaggacggatcactattttccccaagagctattggtatatac 42183204  T
Q  132 cgaagagggtaaaa 145  Q
     |||||||||||||    
T  42183205 tgaagagggtaaaa 42183218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 15739355 - 15739242
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||||  ||||||    
T  15739355 gtataaaaggaaccaaatttaaattttactcaatggatcttgatgtcgttttccccaacaggacggatcactattttccccaagatctattggcatatac 15739256  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  15739255 cgaagagggtaaaa 15739242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 1218234 - 1218343
Alignment:
Q  34 ataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccg 133  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||| ||||||  ||||| ||||||||||||| || ||||||    
T  1218234 ataaaaggaaccaaatttaaatttaactcaagggatcttgatgtcgttttccccaacaggacggatcac--ttttccccaagagctattggtacataccg 1218331  T
Q  134 aagagggtaaaa 145  Q
    ||||||||||||    
T  1218332 aagagggtaaaa 1218343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 23810335 - 23810226
Alignment:
Q  36 aaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccgaa 135  Q
    ||||||||||||||||||||||| |||||||| |||||||||| |||| ||| ||| ||| |||||||| |||  ||||||||||||| |||||||||||    
T  23810335 aaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcattttccccaacatgacggatcactactttgcccaagagctattggtatataccgaa 23810236  T
Q  136 gagggtaaaa 145  Q
    ||||||||||    
T  23810235 gagggtaaaa 23810226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 35162071 - 35162184
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||| ||| |||  ||| |||||||| ||||||| |||||  ||||||    
T  35162071 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgacgttttccccaacaggacgaatccctattttccccaagagttattggcatatac 35162170  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  35162171 cgaagagggtaaaa 35162184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 4758850 - 4758735
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattg--ttatat 129  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||| |||||||| |||  |||||| ||||||   |||||    
T  4758850 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttccccaacatgacggatcactactttgcccaagacctattggtatatat 4758751  T
Q  130 accgaagagggtaaaa 145  Q
    ||||||||||||||||    
T  4758750 accgaagagggtaaaa 4758735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 5912739 - 5912640
Alignment:
Q  46 aaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccgaagagggtaaaa 145  Q
    ||||||||||||| |||||||| ||||||||||||||| ||| ||| |||  |||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  5912739 aaatttaaatttaactcaaggggtcttgatgtcgttttccccaacaggacgtatcactattttccccaagagctattggtatataccgaagaggataaaa 5912640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 9040107 - 9040197
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctatt 122  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||| ||| ||| |||||||| |||  ||||||||||||    
T  9040107 gtataaaaggaatcaaatttaaatttaactcaaggggtcttgatgtcgttttccccaacaggacggatcactactttgcccaagagctatt 9040197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 2766491 - 2766444
Alignment:
Q  36 aaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttt 83  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  2766491 aaaaggaaccaaacttaaatttacctcaagggatcttgatgtcttttt 2766444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 42183216 - 42183267
Alignment:
Q  203 aaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||| ||||||  |||||||||||||||||| |||||||||||| |||||    
T  42183216 aaatatatgtattaattattgtaatgtttgaatcatattaataaaatgagag 42183267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 5912642 - 5912597
Alignment:
Q  203 aaatatgtgtattgcttattgtaatgtttgaatgatattaataaaa 248  Q
    |||||| ||||||  |||||||||||||||||| ||||||||||||    
T  5912642 aaatatatgtattaattattgtaatgtttgaatcatattaataaaa 5912597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 2787149 - 2787262
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||| ||| ||| ||||||||||||| |||||||||||||  ||||||    
T  2787149 gtataaaaggaaccaaatttaaatttaactcaaggagtcttgatgtcgttttccccaacaggacggatcactattttccccaagagctattggcatatac 2787248  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  2787249 cgaagagggtaaaa 2787262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 7661855 - 7661742
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||  || ||||||||||||| |||||||||||||  ||||||    
T  7661855 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgtttttcccaacataacagatcactattttccccaagagctattgacatatac 7661756  T
Q  132 cgaagagggtaaaa 145  Q
     |||||||||||||    
T  7661755 tgaagagggtaaaa 7661742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 14804270 - 14804157
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||||||||| ||||||||||||| |||||||    
T  14804270 gtataaaaggaactaaatttaaatttaactcaagggatcttggtgtcgtttttcccaacaggacggatcactattttccccaagagctattggtatatac 14804171  T
Q  132 cgaagagggtaaaa 145  Q
    | |||| |||||||    
T  14804170 caaagacggtaaaa 14804157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 40032313 - 40032199
Alignment:
Q  31 tgtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatata 130  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| |||  |||||||||||| |||||||||| || ||||||    
T  40032313 tgtataagaggaaccaaatttaaatttaattcaagggatcttgatgtcgttttccccaacaggacgaatcactattttccccaagagctactggtatata 40032214  T
Q  131 ccgaagagggtaaaa 145  Q
    |||||||||||||||    
T  40032213 ccgaagagggtaaaa 40032199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 18171780 - 18171669
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  || ||| ||| ||||||||||||| |||||||||||||  ||||||    
T  18171780 gtataaaaggaaccaaatttaaatttaactcaagggatcttgatgtcgttttctccaacaggacggatcactattttc-ccaagagctattggcatatac 18171682  T
Q  132 cgaagagggtaaa 144  Q
    | |||||||||||    
T  18171681 ctaagagggtaaa 18171669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 1081545 - 1081432
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    |||||||||||||||||||||||||||  ||||||| | ||||| ||||||| ||| ||| |||  |||||||||||  |||||||||||||  ||||||    
T  1081545 gtataaaaggaaccaaatttaaatttaattcaaggggtattgatatcgttttccccaacatgacgaatcactatttttcccaagagctattgacatatac 1081446  T
Q  132 cgaagagggtaaaa 145  Q
    ||||||||||||||    
T  1081445 cgaagagggtaaaa 1081432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 12144487 - 12144598
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatatac 131  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||| | | ||| ||| ||| ||| ||||| |||||||||||||  ||||||    
T  12144487 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgtcgttttcctcaacaggacggattact-ttttc-ccaagagctattggcatatac 12144584  T
Q  132 cgaagagggtaaaa 145  Q
     |||||||||||||    
T  12144585 tgaagagggtaaaa 12144598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 34954430 - 34954478
Alignment:
Q  97 gatcactattttctccaagagctattgttatataccgaagagggtaaaa 145  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  34954430 gatcactattttccccaagagctattggcatataccgaagagggtaaaa 34954478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 40032201 - 40032150
Alignment:
Q  203 aaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||| |||||    
T  40032201 aaatatatgtattaattattgtaatgtttgaatgatattaataaaatgagag 40032150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 43147001 - 43146950
Alignment:
Q  203 aaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||| |||||    
T  43147001 aaatatatgtattaattattgtaatgtttgaatgatattaataaaatgagag 43146950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 16101351 - 16101405
Alignment:
Q  134 aagagggtaaaaataactttttactccaagagggtaaaaagatattaagtagatt 188  Q
    ||||||||||||| |||||||||| | ||||||||||||||| | ||||||||||    
T  16101351 aagagggtaaaaaaaactttttaccctaagagggtaaaaagaaaataagtagatt 16101405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 43147085 - 43147036
Alignment:
Q  34 ataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttt 83  Q
    |||||| |||||||||||||||||| | |||| |||||||||||||||||    
T  43147085 ataaaacgaaccaaatttaaatttaacccaagagatcttgatgtcgtttt 43147036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 8688571 - 8688647
Alignment:
Q  69 tcttgatgtcgtttttccctacaagaccgatcactattttctccaagagctattgttatataccgaagagggtaaaa 145  Q
    |||||||||| |||| ||| ||| |||   ||||||||||| |||||| ||||||  ||||||||||||||||||||    
T  8688571 tcttgatgtcattttccccaacaggacgagtcactattttccccaagaactattggcatataccgaagagggtaaaa 8688647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 14804159 - 14804108
Alignment:
Q  203 aaatatgtgtattgcttattgtaatgtttgaatgatattaataaaaggagag 254  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||||| |||||    
T  14804159 aaatatatgtattaattattctaatgtttgaatgatattaataaaatgagag 14804108  T

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Target: scaffold0217 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 26011 - 25960
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26011 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcttttt 25960  T

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Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 20535 - 20586
Alignment:
Q  32 gtataaaaggaaccaaatttaaatttacctcaagggatcttgatgtcgtttt 83  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  20535 gtataaaaggaaccaaatttaaatttaactcaaggggtcttgatgttgtttt 20586  T

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