View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_high_11 (Length: 303)
Name: NF10371_high_11
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 36236523 - 36236799
Alignment:
| Q |
1 |
tgtcaatattctaaaacaa-ctattgtattgtatnnnnnnnntggtctattatttt-gtcaaatccaacattgacaccattcacttaccaacagaaggac |
98 |
Q |
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| T |
36236523 |
tgtcaatattctaaaacaatctattgtattgtataaaaaaa-tggtctattatttttgtcaaatccaacattgacactattcacttaccaacagaa---c |
36236618 |
T |
|
| Q |
99 |
gacgaacttgagttacacttagcattttgatcaatggatgttatttgnnnnnnnnnnnnnnncaataaacaaatatcaatgcctactttattaggaggaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
36236619 |
gacgaacttgagttacacttagcattttgatcaatggatgttatttgtttgtttttt-----caatagacaaatatcaatgcctactttattaggaggaa |
36236713 |
T |
|
| Q |
199 |
gaggtaaatgttaaccacatgatagaactctgatcctccataataattcatcaatatcgtaagtaatgccgttggattacaccttt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36236714 |
gaggtaaatgttaaccacatgatagaactctgatcctccataataattcatcaatatcgtaagtaatgccgttgaattacaccttt |
36236799 |
T |
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