View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10371_high_20 (Length: 247)

Name: NF10371_high_20
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10371_high_20
NF10371_high_20
[»] chr8 (4 HSPs)
chr8 (1-226)||(43227998-43228223)
chr8 (150-222)||(14839069-14839141)
chr8 (93-209)||(38853602-38853717)
chr8 (1-114)||(14839144-14839257)
[»] chr3 (2 HSPs)
chr3 (3-218)||(49233813-49234026)
chr3 (3-214)||(49234384-49234594)
[»] chr2 (2 HSPs)
chr2 (1-218)||(24455772-24455987)
chr2 (1-149)||(1615106-1615254)
[»] chr1 (4 HSPs)
chr1 (3-218)||(50862451-50862664)
chr1 (84-206)||(25433516-25433637)
chr1 (103-153)||(47723980-47724030)
chr1 (103-153)||(47730972-47731022)
[»] chr7 (3 HSPs)
chr7 (150-222)||(27962549-27962621)
chr7 (1-114)||(27962433-27962546)
chr7 (136-176)||(1480554-1480594)
[»] chr6 (1 HSPs)
chr6 (136-176)||(19180358-19180398)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43228223 - 43227998
Alignment:
Q  1 agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43228223 agagacaaatcagaacgcagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc 43228124  T
Q  101 aactctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatat 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43228123 aactctaaattatgcagaaaatcaccccgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatat 43228024  T
Q  201 gaaaataaagaaacacatattccata 226  Q
    ||||||||||||||||||||||||||    
T  43228023 gaaaataaagaaacacatattccata 43227998  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 14839141 - 14839069
Alignment:
Q  150 gaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatgaaaataaagaaacacatattc 222  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  14839141 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattc 14839069  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 38853602 - 38853717
Alignment:
Q  93 cgaaagccaactctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacat 192  Q
    ||||| ||| |||||||||||| ||||||| ||| ||| ||| | |||| || ||||||||||||||||||||| |||| |||||||||||| |||||||    
T  38853602 cgaaatccagctctaaattatgaagaaaattaccttgaactctcgccaa-ttctgcagaaaattaccttgaacccactccgaatagttaagcgcaaacat 38853700  T
Q  193 ctggatatgaaaataaa 209  Q
    ||| |||| ||| ||||    
T  38853701 ctgaatataaaattaaa 38853717  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 14839257 - 14839144
Alignment:
Q  1 agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc 100  Q
    ||||||||||||||||  |||||||||||||| || | | |||| || |||||| | ||||||| || |||||| |||||||||||| |||| |||| ||    
T  14839257 agagacaaatcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaacc 14839158  T
Q  101 aactctaaattatg 114  Q
    | ||||||| ||||    
T  14839157 agctctaaactatg 14839144  T

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Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 49233813 - 49234026
Alignment:
Q  3 agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa 102  Q
    |||||||||| ||| ||||||||||| || ||||| | |||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||| |||     
T  49233813 agacaaatcaaaacacagggaggaaagaatgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccag 49233912  T
Q  103 ctctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatga 202  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||||||    
T  49233913 ctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaatagttaagcac--acatatggatatga 49234010  T
Q  203 aaataaagaaacacat 218  Q
    ||| ||||||| ||||    
T  49234011 aaaaaaagaaagacat 49234026  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 49234384 - 49234594
Alignment:
Q  3 agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa 102  Q
    |||||||||||||| |||||||||||||| ||||| | |||| ||||||||| | ||||||||||||||||| |||||||| |||||||| |||| |||     
T  49234384 agacaaatcagaacacagggaggaaaaaatgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccag 49234483  T
Q  103 ctctaaattatgc-agaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatg 201  Q
    ||||||||||||| |||||||||||  |||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||  |||||||||||||    
T  49234484 ctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaataattaagcac--acatctggatatg 49234581  T
Q  202 aaaataaagaaac 214  Q
    |||||||||||||    
T  49234582 aaaataaagaaac 49234594  T

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Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 24455987 - 24455772
Alignment:
Q  1 agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc 100  Q
    ||||| ||||||||||  |||||||||||||  |||| | |||| ||||||| | | |||||||||||| |||| |||||||||||||||||||||| ||    
T  24455987 agagaaaaatcagaacatagggaggaaaaaataccactacgtagcagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaacc 24455888  T
Q  101 aactctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatat 200  Q
    | ||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||    
T  24455887 agctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaatagttaagcac--acatctgtatat 24455790  T
Q  201 gaaaataaagaaacacat 218  Q
    ||||||||||||||||||    
T  24455789 gaaaataaagaaacacat 24455772  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 1615106 - 1615254
Alignment:
Q  1 agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc 100  Q
    ||||| |||||||||| | |||| ||||||| ||||| |  ||| ||||||| | | ||||||||||||||||||||||||||||||||||  |||| ||    
T  1615106 agagaaaaatcagaacacggggaagaaaaaatgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaacc 1615205  T
Q  101 aactctaaattatgcagaaaatcaccctgatctcactccaaattatgca 149  Q
    | ||||||||||||||||||||||||  |||||| ||||||| ||||||    
T  1615206 agctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 1615254  T

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Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 50862664 - 50862451
Alignment:
Q  3 agacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaa 102  Q
    |||||||||||||| |||||||||||||||||||| | |||  ||||||||| | ||| || ||||| | |||||||||||||||||||||||||  ||     
T  50862664 agacaaatcagaacacagggaggaaaaaacgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcag 50862565  T
Q  103 ctctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatga 202  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||| |||||||||||| |||||||||| |||||||  |||| |||||||||    
T  50862564 ctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaatagataagcac--acatttggatatga 50862467  T
Q  203 aaataaagaaacacat 218  Q
    |||| |||||| ||||    
T  50862466 aaatgaagaaaaacat 50862451  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 206
Target Start/End: Complemental strand, 25433637 - 25433516
Alignment:
Q  84 tccacatgccgaaagccaactctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaag 183  Q
    |||||||| | ||| ||| ||| |||||||| ||||||| ||| ||| ||| |||| | || |||| ||||||||||||||||||||| |||||||||||    
T  25433637 tccacatgtcaaaatccagctccaaattatgaagaaaattaccttgaactctctccga-ttctgcaaaaaattaccttgaaccaactccgaatagttaag 25433539  T
Q  184 cacaaacatctggatatgaaaat 206  Q
    | |||||||||| ||||||||||    
T  25433538 cgcaaacatctgaatatgaaaat 25433516  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 47724030 - 47723980
Alignment:
Q  103 ctctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaa 153  Q
    |||||||| |||||||||||||||  |||||| ||||||||||||||||||    
T  47724030 ctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgcagaaa 47723980  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 47731022 - 47730972
Alignment:
Q  103 ctctaaattatgcagaaaatcaccctgatctcactccaaattatgcagaaa 153  Q
    |||||||| |||||||||||||||  |||||| ||||||||||||||||||    
T  47731022 ctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgcagaaa 47730972  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 27962549 - 27962621
Alignment:
Q  150 gaaaattaccttgaaccaactctgaatagttaagcacaaacatctggatatgaaaataaagaaacacatattc 222  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  27962549 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaaaataaagaaacaaatattc 27962621  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 27962433 - 27962546
Alignment:
Q  1 agagacaaatcagaacccagggaggaaaaaacgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagcc 100  Q
    ||||||||||||||||  |||||||||||||| || | | |||| || |||||| | ||||||| || |||||| |||||||||||| |||| |||| ||    
T  27962433 agagacaaatcagaacgtagggaggaaaaaactccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaacc 27962532  T
Q  101 aactctaaattatg 114  Q
    | ||||||| ||||    
T  27962533 agctctaaactatg 27962546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 1480594 - 1480554
Alignment:
Q  136 ctccaaattatgcagaaaattaccttgaaccaactctgaat 176  Q
    |||||||||| ||| ||||| ||||||||||||||||||||    
T  1480594 ctccaaattaagcataaaatcaccttgaaccaactctgaat 1480554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 19180398 - 19180358
Alignment:
Q  136 ctccaaattatgcagaaaattaccttgaaccaactctgaat 176  Q
    |||||||||| ||| ||||| ||||||||||||||||||||    
T  19180398 ctccaaattaagcataaaatcaccttgaaccaactctgaat 19180358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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