View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_high_21 (Length: 245)
Name: NF10371_high_21
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1899949 - 1900175
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1899949 |
acaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcacatgaaagcagttc |
1900048 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaataagagcatttatt |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1900049 |
gcccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaaaaagagcatttatt |
1900148 |
T |
|
| Q |
201 |
aataacacattgatacaatacaaggtt |
227 |
Q |
| |
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|||||||||| |||||||||||||||| |
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| T |
1900149 |
aataacacatggatacaatacaaggtt |
1900175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1909395 - 1909621
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1909395 |
acaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcacatgaaagcagttc |
1909494 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaataagagcatttatt |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1909495 |
gcccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagacatatcagaaaaagagcatttatt |
1909594 |
T |
|
| Q |
201 |
aataacacattgatacaatacaaggtt |
227 |
Q |
| |
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|||||||||| |||||||||||||||| |
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| T |
1909595 |
aataacacatggatacaatacaaggtt |
1909621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 1893032 - 1893208
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagcacaaggcaacattcacatgaaagcagttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
1893032 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaaacaagacatctagaaacgagcacaaggcaacattcac-tgaaagcagttc |
1893130 |
T |
|
| Q |
101 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1893131 |
gtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
1893208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 2935363 - 2935189
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagca-caaggcaacattcacatgaaagcagtt |
99 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
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| T |
2935363 |
acaaaaatttgtgcctacagagtgggaaaagtgcatcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcgacattcacatgaaagcagtt |
2935264 |
T |
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| Q |
100 |
cgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2935263 |
cgtccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaat----cattgcactacaggaagaca |
2935189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2930311 - 2930198
Alignment:
| Q |
1 |
acaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagc-acaaggcaacattcacatgaaagcagtt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
2930311 |
acaaaaatctgtgcctacagagttggaaacgtgcgtcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcaacattcacatgaaagcagtt |
2930212 |
T |
|
| Q |
100 |
cgtccaccccttct |
113 |
Q |
| |
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||||||||||||| |
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| T |
2930211 |
tgtccaccccttct |
2930198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 1902579 - 1902654
Alignment:
| Q |
103 |
ccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
178 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1902579 |
ccaccccttctggtatgtctatcataagcagtagagaatttgtccaccaaatcattcattgcactacaggaagaca |
1902654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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