View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_high_24 (Length: 241)
Name: NF10371_high_24
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 5816751 - 5816965
Alignment:
| Q |
10 |
agcagagaatttcaaatatttgacaattagtcatatcaatcataattaataatagtagagaatttcaaatctatgacattgaatgtgttcatatgatgtc |
109 |
Q |
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| T |
5816751 |
agcagagaatttcaaatatttgacaattagtcatatcaatcataattaataatagtagagaatttcaaatctatgacattgaatgtgttcatatgatgtc |
5816850 |
T |
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| Q |
110 |
gttgtttctaacatcaaatattgtgtgatgtggatagaaatttaaatgtgataagcattaacgataattaggccataacaatgtcatgtatactatagaa |
209 |
Q |
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| T |
5816851 |
gttgtttctaacatcaaatattgtgtgatgtggatagaaatttaaatgtgataagcattaacgataattaggccataacaatgtcatgtatactatagaa |
5816950 |
T |
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| Q |
210 |
ggaagactgattgat |
224 |
Q |
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| T |
5816951 |
ggaagactgattgat |
5816965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 5816707 - 5816767
Alignment:
| Q |
19 |
tttcaaatatttgacaattagtcatatcaatcataattaataatagtagagaatttcaaat |
79 |
Q |
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| T |
5816707 |
tttcaaatatgtgaccattagtcatatcaatcataattaatgatagcagagaatttcaaat |
5816767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 5817061 - 5817120
Alignment:
| Q |
13 |
agagaatttcaaatatttgacaattagtcatatcaatcataattaataatagtagagaatt |
73 |
Q |
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| T |
5817061 |
agagaatttcaaatatttgacaatta-tcatatcaatcatgattaaggagagtagagaatt |
5817120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 5817144 - 5817202
Alignment:
| Q |
63 |
agtagagaatttcaaatctatgacattgaatgtgttcatatgatgtcgttgtttctaac |
121 |
Q |
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| T |
5817144 |
agtagagaattttaaatttgtgacattgaatgtgttcctatgatgttgatgtttctaac |
5817202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 27218568 - 27218461
Alignment:
| Q |
63 |
agtagagaatttcaaatctatgacattgaatgtgttcatatgatgtcgttgtttctaacatcaaatattgtgtgatgtggatagaaatttaaatgtgata |
162 |
Q |
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||||||||||||||| | | ||||||||||| ||| ||||||| || |||||||| |||||| |||||||| |||||| ||||||||||| |||| |
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| T |
27218568 |
agtagagaatttcaaccccctcacattgaatgtattcctatgatgccgctgtttctagcatcaagtattgtgttggttggatataaatttaaatgagata |
27218469 |
T |
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| Q |
163 |
agcattaa |
170 |
Q |
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| T |
27218468 |
agcattaa |
27218461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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