View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_high_5 (Length: 405)
Name: NF10371_high_5
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 389
Target Start/End: Complemental strand, 15851311 - 15850921
Alignment:
| Q |
6 |
aggttttctactcctaatgtctatatttttcttcgagtgttgctgatttcgttttctgctagcgttacttgtctatattgctgctttgttcaaaacttgt |
105 |
Q |
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| T |
15851311 |
aggttttctactcctaatgtctatatttttcttcgagtgttgctgattttgttttctgctagcgttgcttgtctatattgctgctttgttcaaaacttgt |
15851212 |
T |
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| Q |
106 |
ctatatttactgctggttatcatgtgcaatattgcactggtgttattgatgtgactgcatttcctcttcctttctataaatgcaccacataaaaaccata |
205 |
Q |
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| T |
15851211 |
ctatatttactgctggttatcatgtgcaatattgcactggtgttattgatgtgactgcatctcctcttcctttctataaatgcaccacataaaaaccata |
15851112 |
T |
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| Q |
206 |
acctg---------aaaataaagtgaagtaaatagttcaatttaaagctaggatacaacgtnnnnnnnnnnnnnnnngctaggatacatgattgtcaatt |
296 |
Q |
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| T |
15851111 |
acctgaaaaaaaaaaaaaaaaagtgaagtaaatagttcaatttaaagttaggatacaacgt--aaaaaaaaaaaaaagctaggatacatgattgtcaatt |
15851014 |
T |
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| Q |
297 |
tcacttccatgtatgcaccctcctaagacttataagcataagaagcataaaaattctacaagatcatattattagacaattttagcaaataat |
389 |
Q |
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| T |
15851013 |
tcacttccatgtatgcaccctcctaagacttataagcataagaagcataaaaattctacaagatcatattattagacaattttagcaaataat |
15850921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 31997478 - 31997426
Alignment:
| Q |
197 |
aaaaccataacctgaaaataaagtgaagtaaatagttcaatttaaagctagga |
249 |
Q |
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| T |
31997478 |
aaaaacataacctaaaaactaagtgaaataaacagttcaatttaaagctagga |
31997426 |
T |
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