View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_high_6 (Length: 401)
Name: NF10371_high_6
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 45641913 - 45642159
Alignment:
| Q |
19 |
atgtacacatctttttcattcatgttttgagtcattgttatttataaaattagcaactgaaacacaagtctttgttactgttgttcagttggattgagtg |
118 |
Q |
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| T |
45641913 |
atgtactcatctttttcattcatgttttgagtcattgttatttataaaattagcaactgaaacacaagtctttgttactgtcgttcagttggattgagtg |
45642012 |
T |
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| Q |
119 |
gcatgctctgattcttatgtatatgtttttgaggatatatgttaatgcctcacatattttaatcttcatatatttggaaagctgtagagaacttagaaac |
218 |
Q |
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| T |
45642013 |
gcatgctctgattcttatgtatatgtttttgaggatatatgttaatgcctcacatattttaatcttcatatatttggaaagctgtagagaacttagaaac |
45642112 |
T |
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| Q |
219 |
aaaatttgcattctggattgtatacttgggtcatagattggtatggc |
265 |
Q |
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| T |
45642113 |
aaaatttgcattctggattgtatacttggctcatagattggtatggc |
45642159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 45642222 - 45642286
Alignment:
| Q |
328 |
gactgatgacattaaagggttccaatgataataactatgcaatcagtattctattgttctctgct |
392 |
Q |
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| T |
45642222 |
gactgatgacattaaagggttccaatgataataactatgcaatcagtattctattgttctctgct |
45642286 |
T |
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