View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_high_7 (Length: 392)
Name: NF10371_high_7
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 55 - 374
Target Start/End: Complemental strand, 25027357 - 25027040
Alignment:
| Q |
55 |
gccaacatattgagagttttgaacattttgggaattctgaattctcacttctcattcattttgaacaaaacaaagagtgaatcagcttgttgctacttca |
154 |
Q |
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| T |
25027357 |
gccaacatattgagagttttgaacattttgggaattctgaattctcacttctcattcattttgaacaaaacaaag-gtgaatcagcttgttgctacttca |
25027259 |
T |
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| Q |
155 |
accatgtgatccctataggtgatgagtaattatatgacagttagacttatgcatatgacaaaactaataatgaatatatggttataatagagtatattgt |
254 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25027258 |
accatgtgatccctataggtgatgag-acctatatgacagttagacttatgcatgtgacaaaagtaataatgaatatatggttataatagagtatattgt |
25027160 |
T |
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| Q |
255 |
gaaatattctacaatcttgtgggatatggaaatggtcccacaatttcttggggagtaaaatgtagttttagttttcatttgaattcctaaatatttggtg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25027159 |
gaaatattctacaatcttgtgggatatggaaatggtcccacaatttcttggggagtaaaatgtagttttagttttcatttgaattcctaaatatttggtg |
25027060 |
T |
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| Q |
355 |
tattttgaataggtagtcag |
374 |
Q |
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|||||||||||||||||||| |
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| T |
25027059 |
tattttgaataggtagtcag |
25027040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 25031951 - 25031889
Alignment:
| Q |
1 |
gactggaaccaatcagtacgtatttttggagggaagtgataatgtgataaccatgccaacata |
63 |
Q |
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| T |
25031951 |
gactggaaccaatcagtacgtatttttggagggaagtgataatgtgataaccatgccaacata |
25031889 |
T |
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