View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10371_low_1 (Length: 683)

Name: NF10371_low_1
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10371_low_1
NF10371_low_1
[»] chr2 (1 HSPs)
chr2 (18-675)||(43602084-43602728)


Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 675
Target Start/End: Original strand, 43602084 - 43602728
Alignment:
Q  18 atatttccctcaaatgattccattattcatttgatattatatttttctctaaacataacctttcaaatatatggtgagtgtttggcctttctcatataga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43602084 atatttccctcaaatgattccattattcatttgatattatatttttctctaaacataacctttcaaatatatggtgagtgtttggcctttctcatattga 43602183  T
Q  118 aaaaagattttttactcataaccctaaactagttgtgagaagtgtagagaagctaaataaaaaacatgaaaaagagttataannnnnnnngtttgtcccc 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  43602184 aaaa-gattttttactcataaccctaaactagttgtgagaagtgtagagaagctaaataaaaaacatgaaaaagagttataattttttttttttgtcccc 43602282  T
Q  218 atgatcataaacactggctcagagagcagttgtaaatgtaaacatacaaccaatatactgtatatgcaacttatttctttaatacaattcagctattgca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||    
T  43602283 atgatcataaacactggctcagagagcagttgtaaatgtaaacatacaaccaatatactgtatatgcaacttat------------attcagctattgca 43602370  T
Q  318 ataaacaaagttatagcaaacatctactaccactatatttcataacctcattaattaattacaccaaacttcatattcataacccacaactcatcatcat 417  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602371 ataaacaaagttatagcaaacatctaccaccaatatatttcataacctcattaattaattacaccaaacttcatattcataacccacaactcatcatcat 43602470  T
Q  418 cataacattaaccaatactacttactacacatcaaaccattgatcatgaaatgatctttcttttgaagagaaataaaacttactaagaaatatcaatgga 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43602471 cataacattaaccaatactacttactacacatcaaaccattgatcatgaaatgatctttcttttgaagagaaatacaacttactaagaaatatcaatgga 43602570  T
Q  518 ctctcccaactcacctgattttgcttttacatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602571 ctctcccaactcacctgattttgcttttacatcatcaaccacagttcacaacaacaacagtaacatctttagaagccgttctacaaaagaaacacctttc 43602670  T
Q  618 tcaaaactctcatgtccaactttctcacgcagtcttcaaaactctccagtttcatctc 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43602671 tcaaaactctcatgtccaactttctcacgcagtcttcaaaactctccagtttcatctc 43602728  T

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