View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_10 (Length: 351)
Name: NF10371_low_10
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 335
Target Start/End: Complemental strand, 32177967 - 32177658
Alignment:
| Q |
28 |
gagaaaagaggttgaagttattataaaaaggaattctcaaacctagtgctatacaaatctaggaagctctcttgtcnnnnnnnnnnnncaccctcctata |
127 |
Q |
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| T |
32177967 |
gagaaaagaggttgaagttattataaaaaggaattctcaaacatagtactacaccaatctaggaagctctcttgtcaaaaaaaaaaacaaccctcctata |
32177868 |
T |
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| Q |
128 |
ggaagccattagtaatcataaccataagcaat--gtctgatgaaactgttcatgttgccatgttcccaagtgcaggaatgggtcatctcacaccattcct |
225 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32177867 |
ggaagccattagtaatcataaccataagcaatatgtctgatgaagttgttcatgttgccatgttcccaagtgctggaatgggtcatctcacaccattcct |
32177768 |
T |
|
| Q |
226 |
aagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtttctcttgcagaatcacaactccttgatcacttt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32177767 |
aagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtttctcttgcagaatcacaactccttgatcacttt |
32177668 |
T |
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| Q |
326 |
cactcttgtt |
335 |
Q |
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|||||||||| |
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| T |
32177667 |
cactcttgtt |
32177658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 154 - 332
Target Start/End: Complemental strand, 32185000 - 32184822
Alignment:
| Q |
154 |
agcaatgtctgatgaaactgttcatgttgccatgttcccaagtgcaggaatgggtcatctcacaccattcctaagactagcatcattgtttctcaacaac |
253 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32185000 |
agcaatgtctgatgaagttgttcatgttgccatgtttccaagtgctggaatgggtcatctcacaccattcctaagactagcatcattgtttcttaacaac |
32184901 |
T |
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| Q |
254 |
aattgcaaagtcactctcatcactcctcttcccactgtttctcttgcagaatcacaactccttgatcactttcactctt |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||| |
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| T |
32184900 |
aattgcaaagtcactctcatcactcctcttcccactgtctctcttgcagaatcccagcttcttgatcactttcactctt |
32184822 |
T |
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