View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_11 (Length: 350)
Name: NF10371_low_11
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 106 - 322
Target Start/End: Original strand, 43119544 - 43119758
Alignment:
| Q |
106 |
acatagacttctatctctcatgttctttgtagtgatttccactctccttgtattgtgattctcttaaaacatccacactaaaggatgttttacctattta |
205 |
Q |
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| T |
43119544 |
acatagacttct--ctctcatgttctctgtagtgatttccactctccttgtattgtgattctcttaaaacatccatactaaaggatgttttacctattta |
43119641 |
T |
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| Q |
206 |
gaaccaaactaaataagtatttttattatggagtaaaatattttggtacttgtaccaaaaaataaaatatattttggtacttatagaaaatgatgattat |
305 |
Q |
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| T |
43119642 |
gcaccaaactaaataagtatttttattacggagtaaaatattttggtacttgtacaaaaaaaaaaaaaaaaatttggtacttatagaaaatgatgattat |
43119741 |
T |
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| Q |
306 |
ggagacatcctctctct |
322 |
Q |
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| T |
43119742 |
agagacatcccctctct |
43119758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 43119490 - 43119543
Alignment:
| Q |
19 |
ataaatctattttttctaggtacaacaactatcaaattgttttcactgggcgac |
72 |
Q |
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| T |
43119490 |
ataaatctattttttctaggtacaacaactttcaagttgttttcactgggcgac |
43119543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 6783874 - 6783700
Alignment:
| Q |
20 |
taaatctatttttt-ctaggtacaacaactatcaaattgttttcactgggcgaccaactttcaataccattcgtagctcatactttgacatagacttcta |
118 |
Q |
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| T |
6783874 |
taaatctatttttttctaggtacaacaactttcaagttgttttcaccaggcgaaaaact---aat--gat--ggagctcatgttttggcacaaacttcta |
6783782 |
T |
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| Q |
119 |
tctctcatgttctttgtagtgatttccactctcc------ttgtattgtgattctcttaaaacatccacactaaaggatgtt |
194 |
Q |
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| T |
6783781 |
tctcttatgttcttcatagtgatttccagtctcctcttgattgtattctgaatctcttaaaacatccacaatagaggatgtt |
6783700 |
T |
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