View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_12 (Length: 329)
Name: NF10371_low_12
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 34909265 - 34909005
Alignment:
| Q |
17 |
acaaaaatctaatatgtagtgttaaagcttaaagtttatcaannnnnnncacaatttaatccttgatatcttcttcaataaaaatttaatcaaaaatatc |
116 |
Q |
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|||||||||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34909265 |
acaaaaatctaatatgtagtgttaaaccttaaaatttatctatttttttcacaatttaatccttgatatcttcttcaataaaaatttaatcaaaaatatc |
34909166 |
T |
|
| Q |
117 |
tat----gtcatttcatatttattggtttaacctctaatttgaattcaatcaatcggtttatctaccttcaattatgagctaatttaacagttataactt |
212 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||| |||||||||||||||||| |
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| T |
34909165 |
tatttatgtcatttcatattcattggtttaacctctaatttgaattcaatcaatcggtttatccaccgttaattataagcttatttaacagttataactt |
34909066 |
T |
|
| Q |
213 |
catttaaccgctaattcacctcatatactcccaattatgattttactttttattcctataa |
273 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34909065 |
catttaaccgctaatccacctcatatactcccaattatgattttactttttattcctataa |
34909005 |
T |
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