View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_13 (Length: 323)
Name: NF10371_low_13
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 46128816 - 46129109
Alignment:
| Q |
20 |
aattacgagtaagaaaactctcatgttatgctaatttaactttgattactttcttttaaccaataattgggaagattactagtttttccctaagttaatg |
119 |
Q |
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| T |
46128816 |
aattacgagtaagaaaactctcatgttatgctaatttaactttgattactttcttttaaccaataattgggaagattactagtttttccctaagttaatg |
46128915 |
T |
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| Q |
120 |
ttttatgaaataggcctcaaaa-taagaaaattattatgagaaatccaactttatgttgctaaacttttttgctatgagaattcaaccttagtttgtgta |
218 |
Q |
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| T |
46128916 |
ttttatgaaataggcctcaaaaataagaaaattattatgagaaatccaactttatgttgctaaacttttttgctatgagaattcaaccttagtttgtgta |
46129015 |
T |
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| Q |
219 |
ggaatcatgaacactgatttacctttaccttagcttacttcaactcagcattccttattaaagagagcccccatgatagagcatattcatctca |
312 |
Q |
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| T |
46129016 |
ggaatcatgaacactgatttacctttaccttagcttacttcaactcagcattccttattaaagagagcccccatggtagagcatattcatctca |
46129109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 38655180 - 38655099
Alignment:
| Q |
31 |
agaaaactctcatgttatgctaatttaactttgattactttcttttaaccaataattgggaagattactagtttttccctaa |
112 |
Q |
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|||||| ||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||| |
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| T |
38655180 |
agaaaagtcttatgttatgctaatttaactttgattagttgcttttaaccaataattgggaaaattactagttttcccctaa |
38655099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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