View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10371_low_15 (Length: 311)
Name: NF10371_low_15
Description: NF10371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10371_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 35867596 - 35867308
Alignment:
| Q |
1 |
cgatttcgtttttcaacttttgcannnnnnn-caatgttactaaaatgagaaccggaatcgttttttggttgaaggatggcggcaacgatgcacgccaag |
99 |
Q |
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| T |
35867596 |
cgatttcgtttttcaacttttgcattttttttcaatgttactaaaatgagaaccggaatcgttttttggttgaaggatggcggcaacgatgcacgccaag |
35867497 |
T |
|
| Q |
100 |
atcaacaggaaaaagttgaataaactcaatatcatcaaaatctggtaattaaaatcacttttactcataatcgattatttacatgcttatccttcttctt |
199 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35867496 |
atcaacaggaagaagttgaataagctcaatatcatcaaaatctggtaattaaaatcacttttactcataatcgattatttacatgcttattcttcttctt |
35867397 |
T |
|
| Q |
200 |
cttcaactgaaatcgtttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgggtaa |
288 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35867396 |
ctttaactgaaatcgtttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgggtaa |
35867308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 34817504 - 34817388
Alignment:
| Q |
32 |
caatgttactaaaatgagaaccggaatcg-ttttttggttgaaggatggcggcaacgatgcacgccaagatcaacaggaaaaagttgaataaactcaata |
130 |
Q |
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|||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
34817504 |
caatgttactaaaatgaggatcggaatcgattttttgtttgaaggatggcggcaacgatgcacgctaagatcaacaggaagaagttgaataagctcaata |
34817405 |
T |
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| Q |
131 |
tcatcaaaatctggtaa |
147 |
Q |
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||||||||||||||||| |
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| T |
34817404 |
tcatcaaaatctggtaa |
34817388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 34817319 - 34817247
Alignment:
| Q |
216 |
ttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgggtaa |
288 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34817319 |
ttcttcacagtgaagaaattctgaatccagcgattcccatggctcttagactttctggaatactcatgggtaa |
34817247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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